RNA–Protein interactions for RNA: ENST00000492977.5

PTPN7-216, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 1 (best)

Gene PTPN7, Length 1,595 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-216	ENST00000492977	GANC	Q8TET4	914 aa		13.64	□□□□□ -0.23
PTPN7-216	ENST00000492977	PYDC1	Q8WXC3	89 aa		13.64	□□□□□ -0.23
PTPN7-216	ENST00000492977	FOXJ1	Q92949	421 aa		13.64	□□□□□ -0.23
PTPN7-216	ENST00000492977	FRG2B	Q96QU4	278 aa		13.64	□□□□□ -0.23
PTPN7-216	ENST00000492977	ZBTB18	Q99592	522 aa		13.64	□□□□□ -0.23
PTPN7-216	ENST00000492977	TACO1	Q9BSH4	297 aa	Known RBP	13.64	□□□□□ -0.23
PTPN7-216	ENST00000492977	ACPT	Q9BZG2	426 aa		13.64	□□□□□ -0.23
PTPN7-216	ENST00000492977	MKRN2	Q9H000	416 aa	Known RBP	13.64	□□□□□ -0.23
PTPN7-216	ENST00000492977	ITM2C	Q9NQX7	267 aa		13.64	□□□□□ -0.23
PTPN7-216	ENST00000492977	ZFR2	Q9UPR6	939 aa	Known RBP	13.64	□□□□□ -0.23
PTPN7-216	ENST00000492977	LAMA3	Q16787	3333 aa		13.64	□□□□□ -0.23
PTPN7-216	ENST00000492977	KRT87P	A6NCN2	255 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	PRORSD1P	A6NEY8	169 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	FXYD1	O00168	92 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	ADAM23	O75077	832 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	BAG2	O95816	211 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	ACPP	P15309	386 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	CASP2	P42575	452 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	ERF	P50548	548 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	SLC7A2	P52569	658 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	MRPS21	P82921	87 aa	Known RBP	13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	GRSF1	Q12849	480 aa	Known RBP eCLIP	13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	SGCG	Q13326	291 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	NFE2L1	Q14494	772 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	INPP5A	Q14642	412 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	KIAA0040	Q15053	153 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	PON2	Q15165	354 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	MAP7D1	Q3KQU3	841 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	XKR6	Q5GH73	641 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	PRR23B	Q6ZRT6	265 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	OXR1	Q8N573	874 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	DPP10	Q8N608	796 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	NRG4	Q8WWG1	115 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	VPS33A	Q96AX1	596 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	MTFMT	Q96DP5	389 aa	Known RBP	13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	CMTM7	Q96FZ5	175 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	MED8	Q96G25	268 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	C1QTNF7	Q9BXJ2	289 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	OR52A5	Q9H2C5	316 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	ACTL8	Q9H568	366 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	MBNL1	Q9NR56	388 aa	Known RBP	13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	TMED5	Q9Y3A6	229 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	KCNE2	Q9Y6J6	123 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977	PIAS3	Q9Y6X2	628 aa		13.63	□□□□□ -0.23
PTPN7-216	ENST00000492977		A0A1W2PQF6	199 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	ASPDH	A6ND91	283 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977		H0YIV9	168 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	KMO	O15229	486 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	NVL	O15381	856 aa	Known RBP	13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	KLF8	O95600	359 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	PAK4	O96013	591 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	PRPS2	P11908	318 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	HOXB2	P14652	356 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	SLC6A2	P23975	617 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	VARS	P26640	1264 aa	Known RBP	13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	MAPK1	P28482	360 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	MSX2	P35548	267 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	PRSS12	P56730	875 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	CSTF3	Q12996	717 aa	Known RBP	13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	NFYC	Q13952	458 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	E2F2	Q14209	437 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	FGL2	Q14314	439 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	IRF4	Q15306	451 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	TMEM259	Q4ZIN3	620 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	GRHL2	Q6ISB3	625 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	CAPN13	Q6MZZ7	669 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	DOK6	Q6PKX4	331 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	PDZD3	Q86UT5	571 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	TP53I13	Q8NBR0	393 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	BHLHE22	Q8NFJ8	381 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	OR14C36	Q8NHC7	312 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	ZNF480	Q8WV37	535 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	DNASE1L2	Q92874	299 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	LRCH3	Q96II8	777 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	OR4K3	Q96R72	315 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	LGR4	Q9BXB1	951 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	ZDHHC5	Q9C0B5	715 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	WDR26	Q9H7D7	661 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	IL1RL2	Q9HB29	575 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	PREB	Q9HCU5	417 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	PHPT1	Q9NRX4	125 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	ATG2B	Q96BY7	2078 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	C15orf38-AP3S2	A0A0A6YYH1	394 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977		E7EQ34	232 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	HSD3B1	P14060	373 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	HSD17B1	P14061	328 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	TCN1	P20061	433 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	HSD3B2	P26439	372 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	NEK2	P51955	445 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	PNLIPRP1	P54315	467 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	SFSWAP	Q12872	951 aa	Known RBP	13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	DOC2A	Q14183	400 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	PLA2G4E	Q3MJ16	856 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	TIGD2	Q4W5G0	525 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	USP39	Q53GS9	565 aa	Known RBP	13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	PAGE3	Q5JUK9	113 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	HABP4	Q5JVS0	413 aa	Known RBP	13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	METRNL	Q641Q3	311 aa		13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	FAM83H	Q6ZRV2	1179 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPN7-216	ENST00000492977	ARPIN	Q7Z6K5	226 aa		13.62	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms