RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 OR2B6P58173 313 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 ZNF33AQ06730 810 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 DSC3Q14574 896 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 UBE2J2Q8N2K1 259 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 SMG8Q8ND04 991 aaKnown RBP16.09■□□□□ 0.17
COL7A1-210ENST00000487017 GPER1Q99527 375 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 PAK6Q9NQU5 681 aaPredicted RBP16.09■□□□□ 0.17
COL7A1-210ENST00000487017 ILVBLA1L0T0 632 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 ZNF879B4DU55 563 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 ACOX3O15254 700 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 RFPL1O75677 317 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 NDUFA9Q16795 377 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 OR10H4Q8NGA5 316 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 OR4C6Q8NH72 309 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 MIPEPQ99797 713 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 ITPAQ9BY32 194 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 SLC29A3Q9BZD2 475 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 DERL2Q9GZP9 239 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 AMBNQ9NP70 447 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 GPN3Q9UHW5 284 aaPredicted RBP16.09■□□□□ 0.17
COL7A1-210ENST00000487017 ERVW-1Q9UQF0 538 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 CPSF4LA6NMK7 179 aaKnown RBP16.08■□□□□ 0.17
COL7A1-210ENST00000487017 BIRC7Q96CA5 298 aa16.08■□□□□ 0.17
COL7A1-210ENST00000487017 CYP2S1Q96SQ9 504 aa16.08■□□□□ 0.17
COL7A1-210ENST00000487017 GPR88Q9GZN0 384 aa16.08■□□□□ 0.17
COL7A1-210ENST00000487017 SMOC2Q9H3U7 446 aa16.08■□□□□ 0.17
COL7A1-210ENST00000487017 POFUT2Q9Y2G5 429 aa16.08■□□□□ 0.17
COL7A1-210ENST00000487017 CDC7O00311 574 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 DNAJB13P59910 316 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 RNF31Q96EP0 1072 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 C5orf34Q96MH7 638 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 SEPT4O43236 478 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 REM1O75628 298 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 CHRM5P08912 532 aaPredicted RBP16.08■□□□□ 0.16
COL7A1-210ENST00000487017 SYT16Q17RD7 645 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 OR4F3Q6IEY1 312 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 PYCR2Q96C36 320 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 SLC35A5Q9BS91 424 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 DCSTAMPQ9H295 470 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 ABCB8Q9NUT2 735 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 EVA1BQ9NVM1 165 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 MSRAQ9UJ68 235 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 SRPRAP08240 638 aaKnown RBP16.08■□□□□ 0.16
COL7A1-210ENST00000487017 PDHA2P29803 388 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 XKP51811 444 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 NOGQ13253 232 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 MOGSQ13724 837 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 CARD16Q5EG05 197 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 CHADLQ6NUI6 762 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 SMARCD3Q6STE5 483 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 GOLGA7Q7Z5G4 137 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 CAND1Q86VP6 1230 aaKnown RBP16.08■□□□□ 0.16
COL7A1-210ENST00000487017 DMRTB1Q96MA1 342 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 COMMD3Q9UBI1 195 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 PSAT1Q9Y617 370 aa16.08■□□□□ 0.16
COL7A1-210ENST00000487017 ATP4BP51164 291 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 DUOXA1Q1HG43 343 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 UBAP2Q5T6F2 1119 aaKnown RBP16.07■□□□□ 0.16
COL7A1-210ENST00000487017 IDNKQ5T6J7 187 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 NAPRTQ6XQN6 538 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 C2CD4AQ8NCU7 369 aaPredicted RBP16.07■□□□□ 0.16
COL7A1-210ENST00000487017 OR4F6Q8NGB9 312 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 SLC22A17Q8WUG5 538 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 ACDQ96AP0 544 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 ZNF641Q96N77 438 aaPredicted RBP16.07■□□□□ 0.16
COL7A1-210ENST00000487017 THUMPD1Q9NXG2 353 aaKnown RBP16.07■□□□□ 0.16
COL7A1-210ENST00000487017 PCDHGA10Q9Y5H3 936 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 ALPPP05187 535 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 PLA2G16P53816 162 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 CASP9P55211 416 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 PDCD4Q53EL6 469 aaKnown RBP16.07■□□□□ 0.16
COL7A1-210ENST00000487017 LMLNQ96KR4 655 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 SUSD3Q96L08 255 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 PRICKLE1Q96MT3 831 aaPredicted RBP16.07■□□□□ 0.16
COL7A1-210ENST00000487017 DEFB118Q96PH6 123 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 NPY6RQ99463 290 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 RNF39Q9H2S5 420 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 DUS2Q9NX74 493 aaKnown RBP16.07■□□□□ 0.16
COL7A1-210ENST00000487017 KLF15Q9UIH9 416 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 SAP18O00422 153 aaKnown RBP16.07■□□□□ 0.16
COL7A1-210ENST00000487017 DBIP07108 87 aaKnown RBP16.07■□□□□ 0.16
COL7A1-210ENST00000487017 ALPIP09923 528 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 MPP2Q14168 576 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 EIPR1Q53HC9 387 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 FRG2Q64ET8 278 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 SLC30A6Q6NXT4 461 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 ATCAYQ86WG3 371 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 CILP2Q8IUL8 1156 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 FRG2BQ96QU4 278 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 SLC22A4Q9H015 551 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 SPIN1Q9Y657 262 aaPredicted RBP16.07■□□□□ 0.16
COL7A1-210ENST00000487017 SPIN4Q56A73 249 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 LRRC73Q5JTD7 316 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 SPRYD7Q5W111 196 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 MBOAT1Q6ZNC8 495 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 GALNTL5Q7Z4T8 443 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 LCN9Q8WX39 176 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 SIX4Q9UIU6 781 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 TMED5Q9Y3A6 229 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 RSL1D1O76021 490 aaKnown RBP16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms