RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 GPR75-ASB3A0A0A6YYF3 556 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 IGKV6D-41A0A0C4DH26 115 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 A0A1W2PPR1 153 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 MPTX1A8MV57 137 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 MEIS2O14770 477 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 IDH3BO43837 385 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 ENTPD3O75355 529 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 SEC24AO95486 1093 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 HERV-K104P61576 105 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 CSNK2BP67870 215 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 RAPSNQ13702 412 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 ODF4Q2M2E3 257 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 SYT14P1Q58G82 188 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 WLSQ5T9L3 541 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 FAM205BPQ63HN1 556 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 KRTAP5-5Q701N2 237 aaPredicted RBP2.67□□□□□ -1.98
VPS50-216ENST00000484954 CATSPERDQ86XM0 798 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 CDC20BQ86Y33 519 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 AQP11Q8NBQ7 271 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 GPRC5AQ8NFJ5 357 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 MIPOL1Q8TD10 442 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 SSMEM1Q8WWF3 244 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 PIGBQ92521 554 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 LPGAT1Q92604 370 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 SPDL1Q96EA4 605 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 FAM20AQ96MK3 541 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 PRICKLE1Q96MT3 831 aaPredicted RBP2.67□□□□□ -1.98
VPS50-216ENST00000484954 SOSTQ9BQB4 213 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 CCDC3Q9BQI4 270 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 WWTR1Q9GZV5 400 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 MMP27Q9H306 513 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 SLC35C2Q9NQQ7 365 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 GKN1Q9NS71 199 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 SLC7A10Q9NS82 523 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 FAM207AQ9NSI2 230 aaPredicted RBP2.67□□□□□ -1.98
VPS50-216ENST00000484954 BLOC1S4Q9NUP1 217 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 SPHK1Q9NYA1 384 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 TBC1D29Q9UFV1 150 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 TMED3Q9Y3Q3 217 aa2.67□□□□□ -1.98
VPS50-216ENST00000484954 ZNF644Q9H582 1327 aaPredicted RBP2.67□□□□□ -1.98
VPS50-216ENST00000484954 A0A1W2PNU3 283 aaPredicted RBP2.66□□□□□ -1.98
VPS50-216ENST00000484954 KPNA7A9QM74 516 aa2.66□□□□□ -1.98
VPS50-216ENST00000484954 PI4K2BG5E9Z4 385 aa2.66□□□□□ -1.98
VPS50-216ENST00000484954 FPGTO14772 594 aa2.66□□□□□ -1.98
VPS50-216ENST00000484954 ZBED4O75132 1171 aa2.66□□□□□ -1.98
VPS50-216ENST00000484954 C22orf31O95567 290 aa2.66□□□□□ -1.98
VPS50-216ENST00000484954 GJA1P17302 382 aa2.66□□□□□ -1.98
VPS50-216ENST00000484954 PRKACGP22612 351 aa2.66□□□□□ -1.98
VPS50-216ENST00000484954 LHCGRP22888 699 aa2.66□□□□□ -1.98
VPS50-216ENST00000484954 ELAVL2Q12926 359 aaKnown RBP2.66□□□□□ -1.98
VPS50-216ENST00000484954 LY6DQ14210 128 aa2.66□□□□□ -1.98
VPS50-216ENST00000484954 UGT3A2Q3SY77 523 aa2.66□□□□□ -1.98
VPS50-216ENST00000484954 ARHGAP22Q7Z5H3 698 aa2.66□□□□□ -1.98
VPS50-216ENST00000484954 MMD2Q8IY49 270 aa2.66□□□□□ -1.98
VPS50-216ENST00000484954 GUF1Q8N442 669 aaKnown RBP2.66□□□□□ -1.98
VPS50-216ENST00000484954 FBXL16Q8N461 479 aa2.66□□□□□ -1.98
VPS50-216ENST00000484954 TEX19Q8NA77 164 aa2.66□□□□□ -1.98
VPS50-216ENST00000484954 OR13C3Q8NGS6 347 aa2.66□□□□□ -1.98
VPS50-216ENST00000484954 GATAD1Q8WUU5 269 aa2.66□□□□□ -1.98
VPS50-216ENST00000484954 CCDC107Q8WV48 283 aa2.66□□□□□ -1.98
VPS50-216ENST00000484954 APOBEC4Q8WW27 367 aaKnown RBP2.66□□□□□ -1.98
VPS50-216ENST00000484954 CCDC34Q96HJ3 373 aa2.66□□□□□ -1.98
VPS50-216ENST00000484954 MS4A10Q96PG2 267 aa2.66□□□□□ -1.98
VPS50-216ENST00000484954 OSGEPL1Q9H4B0 414 aa2.66□□□□□ -1.98
VPS50-216ENST00000484954 EQTNQ9NQ60 294 aa2.66□□□□□ -1.98
VPS50-216ENST00000484954 OR6C2Q9NZP2 312 aa2.66□□□□□ -1.98
VPS50-216ENST00000484954 ADD3Q9UEY8 706 aaKnown RBP2.66□□□□□ -1.98
VPS50-216ENST00000484954 FSD2A1L4K1 749 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 C2orf81A6NN90 581 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 SRRM5B3KS81 715 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 TSPAN1O60635 241 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 GLRA3O75311 464 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 CDK2AP2O75956 126 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 CSH1P0DML2 217 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 CSH2P0DML3 217 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 HAPLN1P10915 354 aaPredicted RBP2.65□□□□□ -1.99
VPS50-216ENST00000484954 SLC9A3P48764 834 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 HUNKP57058 714 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 MS4A2Q01362 244 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 PAX8Q06710 450 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 FASTKD3Q14CZ7 662 aaKnown RBP2.65□□□□□ -1.99
VPS50-216ENST00000484954 EXT1Q16394 746 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 UGT3A1Q6NUS8 523 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 LINC00612Q8N6U2 182 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 SYN2Q92777 582 aaPredicted RBP2.65□□□□□ -1.99
VPS50-216ENST00000484954 SKA1Q96BD8 255 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 SLC22A18Q96BI1 424 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 FAM218AQ96MZ4 157 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 GOLPH3LQ9H4A5 285 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 OPA3Q9H6K4 179 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 MYNNQ9NPC7 610 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 HAUS2Q9NVX0 235 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 PSD3Q9NYI0 1048 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 MUTYHQ9UIF7 546 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 FBXO2Q9UK22 296 aaPredicted RBP2.65□□□□□ -1.99
VPS50-216ENST00000484954 PADI2Q9Y2J8 665 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 NME7Q9Y5B8 376 aa2.65□□□□□ -1.99
VPS50-216ENST00000484954 SNURFLB1AK76 121 aa2.64□□□□□ -1.99
VPS50-216ENST00000484954 TRUB2O95900 331 aaKnown RBP2.64□□□□□ -1.99
VPS50-216ENST00000484954 VTNP04004 478 aa2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms