RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	KLHL41	O60662	606 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	NPPB	P16860	134 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	NCF2	P19878	526 aa	Predicted RBP	10.87	□□□□□ -0.67
APTX-223	ENST00000479656	DHPS	P49366	369 aa	Predicted RBP	10.87	□□□□□ -0.67
APTX-223	ENST00000479656	TBPL1	P62380	186 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	CDC16	Q13042	620 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	PRRT3	Q5FWE3	981 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	SPDYA	Q5MJ70	313 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	ACAD11	Q709F0	780 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	DTWD2	Q8NBA8	298 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	ERP27	Q96DN0	273 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	C19orf60	Q96EN9	201 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	MAEL	Q96JY0	434 aa	Known RBP	10.87	□□□□□ -0.67
APTX-223	ENST00000479656	SGPP1	Q9BX95	441 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	GSDMC	Q9BYG8	508 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	NMUR2	Q9GZQ4	415 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	XKR8	Q9H6D3	395 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	MVB12B	Q9H7P6	319 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	TAAR2	Q9P1P5	351 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	APOBEC3B	Q9UH17	382 aa	Known RBP	10.87	□□□□□ -0.67
APTX-223	ENST00000479656	POLG2	Q9UHN1	485 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	ZFP69B	Q9UJL9	534 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	G3BP2	Q9UN86	482 aa	Known RBP	10.87	□□□□□ -0.67
APTX-223	ENST00000479656		A6NCN8	305 aa		10.86	□□□□□ -0.67
APTX-223	ENST00000479656		E7EQ34	232 aa		10.86	□□□□□ -0.67
APTX-223	ENST00000479656	BCAT2	O15382	392 aa	Predicted RBP	10.86	□□□□□ -0.67
APTX-223	ENST00000479656	HR	O43593	1189 aa		10.86	□□□□□ -0.67
APTX-223	ENST00000479656	CCDC22	O60826	627 aa		10.86	□□□□□ -0.67
APTX-223	ENST00000479656	GPR37L1	O60883	481 aa		10.86	□□□□□ -0.67
APTX-223	ENST00000479656	CHEK2	O96017	543 aa		10.86	□□□□□ -0.67
APTX-223	ENST00000479656	CSF2	P04141	144 aa		10.86	□□□□□ -0.67
APTX-223	ENST00000479656	F3	P13726	295 aa		10.86	□□□□□ -0.67
APTX-223	ENST00000479656	HMOX2	P30519	316 aa		10.86	□□□□□ -0.67
APTX-223	ENST00000479656	SLC19A1	P41440	591 aa		10.86	□□□□□ -0.67
APTX-223	ENST00000479656	HTR6	P50406	440 aa		10.86	□□□□□ -0.67
APTX-223	ENST00000479656	INHBC	P55103	352 aa		10.86	□□□□□ -0.67
APTX-223	ENST00000479656	NXPH1	P58417	271 aa		10.86	□□□□□ -0.67
APTX-223	ENST00000479656	IRF8	Q02556	426 aa		10.86	□□□□□ -0.67
APTX-223	ENST00000479656	CHIT1	Q13231	466 aa		10.86	□□□□□ -0.67
APTX-223	ENST00000479656	CPSF6	Q16630	551 aa	Known RBP eCLIP	10.86	□□□□□ -0.67
APTX-223	ENST00000479656	IYD	Q6PHW0	289 aa		10.86	□□□□□ -0.67
APTX-223	ENST00000479656	OR52E1	Q8NGJ3	308 aa		10.86	□□□□□ -0.67
APTX-223	ENST00000479656	PATE1	Q8WXA2	126 aa		10.86	□□□□□ -0.67
APTX-223	ENST00000479656	MTFMT	Q96DP5	389 aa	Known RBP	10.86	□□□□□ -0.67
APTX-223	ENST00000479656	CCDC28B	Q9BUN5	200 aa		10.86	□□□□□ -0.67
APTX-223	ENST00000479656	NUSAP1	Q9BXS6	441 aa	Known RBP	10.86	□□□□□ -0.67
APTX-223	ENST00000479656	CCDC177	Q9NQR7	707 aa	Predicted RBP	10.86	□□□□□ -0.67
APTX-223	ENST00000479656	TRPS1	Q9UHF7	1281 aa		10.86	□□□□□ -0.67
APTX-223	ENST00000479656	HEBP2	Q9Y5Z4	205 aa		10.86	□□□□□ -0.67
APTX-223	ENST00000479656	KCNE2	Q9Y6J6	123 aa		10.86	□□□□□ -0.67
APTX-223	ENST00000479656	COLEC10	Q9Y6Z7	277 aa		10.86	□□□□□ -0.67
APTX-223	ENST00000479656	ATXN2	Q99700	1313 aa	Known RBP	10.86	□□□□□ -0.67
APTX-223	ENST00000479656	LRP4	O75096	1905 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	CLGN	O14967	610 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	VILL	O15195	856 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	WFS1	O76024	890 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	UBOX5	O94941	541 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	ENO1	P06733	434 aa	Known RBP	10.85	□□□□□ -0.67
APTX-223	ENST00000479656	SERPINA6	P08185	405 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	ERG	P11308	486 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	HSD17B2	P37059	387 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	ARHGAP19	Q14CB8	494 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	ABRAXAS2	Q15018	415 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	CYP2A13	Q16696	494 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	XKR6	Q5GH73	641 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	THEMIS2	Q5TEJ8	643 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	TMEM198	Q66K66	360 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	IL27RA	Q6UWB1	636 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	CCDC121	Q6ZUS5	278 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	LARP4	Q71RC2	724 aa	Known RBP eCLIP	10.85	□□□□□ -0.67
APTX-223	ENST00000479656	EFL1	Q7Z2Z2	1120 aa	Known RBP	10.85	□□□□□ -0.67
APTX-223	ENST00000479656	CLNK	Q7Z7G1	428 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	SFTPA2	Q8IWL1	248 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	L3MBTL4	Q8NA19	623 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	CEP70	Q8NHQ1	597 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	SETD7	Q8WTS6	366 aa	Known RBP	10.85	□□□□□ -0.67
APTX-223	ENST00000479656	GAB3	Q8WWW8	586 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	JPH3	Q8WXH2	748 aa	Predicted RBP	10.85	□□□□□ -0.67
APTX-223	ENST00000479656	NEIL2	Q969S2	332 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	CXorf40B	Q96DE9	158 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	HBEGF	Q99075	208 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	MIPEP	Q99797	713 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	LRRC61	Q9BV99	259 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	ACAT2	Q9BWD1	397 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	AKTIP	Q9H8T0	292 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	FARSB	Q9NSD9	589 aa	Known RBP	10.85	□□□□□ -0.67
APTX-223	ENST00000479656	SPATA7	Q9P0W8	599 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	ARMCX1	Q9P291	453 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	SH2B3	Q9UQQ2	575 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	KCNE1B	A0A087WTH5	132 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	NME1	P15531	152 aa	Known RBP	10.85	□□□□□ -0.67
APTX-223	ENST00000479656	GNAZ	P19086	355 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	VARS	P26640	1264 aa	Known RBP	10.85	□□□□□ -0.67
APTX-223	ENST00000479656	AFF3	P51826	1226 aa	Known RBP	10.85	□□□□□ -0.67
APTX-223	ENST00000479656	C21orf59	P57076	290 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	YBX1	P67809	324 aa	Known RBP	10.85	□□□□□ -0.67
APTX-223	ENST00000479656	UBAP2L	Q14157	1087 aa	Known RBP	10.85	□□□□□ -0.67
APTX-223	ENST00000479656	DOC2A	Q14183	400 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	GALNTL6	Q49A17	601 aa		10.85	□□□□□ -0.67
APTX-223	ENST00000479656	SGO1	Q5FBB7	561 aa		10.85	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms