RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 PTRH2Q9Y3E5 179 aaKnown RBP1.2□□□□□ -2.22
UBXN4-207ENST00000471246 NME7Q9Y5B8 376 aa1.2□□□□□ -2.22
UBXN4-207ENST00000471246 ADAMTS9Q9P2N4 1935 aa1.2□□□□□ -2.22
UBXN4-207ENST00000471246 RUSC2Q8N2Y8 1516 aa1.2□□□□□ -2.22
UBXN4-207ENST00000471246 ZNF541Q9H0D2 1346 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 LOC102723996A0A087X1L8 192 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 A0A1W2PQ09 198 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 TMEM221A6NGB7 291 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 C2orf81A6NN90 581 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 ENO4A6NNW6 628 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 MEIS2O14770 477 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 FPGTO14772 594 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 DOK2O60496 412 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 TSPAN1O60635 241 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 ZBED4O75132 1171 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 GLRA3O75311 464 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 GJB3O75712 270 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 TOMM70O94826 608 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 DDHD2O94830 711 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 SLC2A2P11168 524 aaPredicted RBP1.19□□□□□ -2.22
UBXN4-207ENST00000471246 TRIM21P19474 475 aaKnown RBP1.19□□□□□ -2.22
UBXN4-207ENST00000471246 PRKACGP22612 351 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 JAK1P23458 1154 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 DNASE1P24855 282 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 RBMS1P29558 406 aaKnown RBP1.19□□□□□ -2.22
UBXN4-207ENST00000471246 GCH1P30793 250 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 CCR10P46092 362 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 SLC9A3P48764 834 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 MAT1AQ00266 395 aaKnown RBP1.19□□□□□ -2.22
UBXN4-207ENST00000471246 COX10Q12887 443 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 ELAVL2Q12926 359 aaKnown RBP1.19□□□□□ -2.22
UBXN4-207ENST00000471246 TNIP1Q15025 636 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 CA9Q16790 459 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 PDLIM3Q53GG5 364 aaPredicted RBP1.19□□□□□ -2.22
UBXN4-207ENST00000471246 RNASEH2BQ5TBB1 312 aaKnown RBP1.19□□□□□ -2.22
UBXN4-207ENST00000471246 RALGAPA1Q6GYQ0 2036 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 ZNF343Q6P1L6 599 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 KIF6Q6ZMV9 814 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 C1orf122Q6ZSJ8 110 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 ARHGAP22Q7Z5H3 698 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 TMPRSS11BQ86T26 416 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 ERC1Q8IUD2 1116 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 LINC00346Q8IVM7 164 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 MMD2Q8IY49 270 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 ZNF595Q8IYB9 648 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 C17orf53Q8N3J3 647 aaPredicted RBP1.19□□□□□ -2.22
UBXN4-207ENST00000471246 GUF1Q8N442 669 aaKnown RBP1.19□□□□□ -2.22
UBXN4-207ENST00000471246 POC5Q8NA72 575 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 AQP11Q8NBQ7 271 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 OR2L2Q8NH16 312 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 MAPK15Q8TD08 544 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 PTPMT1Q8WUK0 201 aaPredicted RBP1.19□□□□□ -2.22
UBXN4-207ENST00000471246 SSMEM1Q8WWF3 244 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 GTF3AQ92664 365 aaKnown RBP1.19□□□□□ -2.22
UBXN4-207ENST00000471246 DHX58Q96C10 678 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 SPDL1Q96EA4 605 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 C10orf90Q96M02 699 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 FAM20AQ96MK3 541 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 TIGD1Q96MW7 591 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 NECTIN4Q96NY8 510 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 SOSTQ9BQB4 213 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 RAB11FIP5Q9BXF6 653 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 TRIM6Q9C030 488 aaPredicted RBP1.19□□□□□ -2.22
UBXN4-207ENST00000471246 MIS12Q9H081 205 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 MMP27Q9H306 513 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 OSGEPL1Q9H4B0 414 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 PPANQ9NQ55 473 aaKnown RBP1.19□□□□□ -2.22
UBXN4-207ENST00000471246 EQTNQ9NQ60 294 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 PRR34Q9NV39 138 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 DPP3Q9NY33 737 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 THEGQ9P2T0 379 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 ZNF69Q9UC07 566 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 MUTYHQ9UIF7 546 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 ZNF215Q9UL58 517 aaPredicted RBP1.19□□□□□ -2.22
UBXN4-207ENST00000471246 LAS1LQ9Y4W2 734 aaKnown RBP1.19□□□□□ -2.22
UBXN4-207ENST00000471246 TRIM17Q9Y577 477 aa1.19□□□□□ -2.22
UBXN4-207ENST00000471246 ARID4BQ4LE39 1312 aaPredicted RBP1.18□□□□□ -2.22
UBXN4-207ENST00000471246 ZNF646O15015 1829 aaPredicted RBP1.18□□□□□ -2.22
UBXN4-207ENST00000471246 LOC100509620A0A075B734 347 aa1.18□□□□□ -2.22
UBXN4-207ENST00000471246 GPR75-ASB3A0A0A6YYF3 556 aa1.18□□□□□ -2.22
UBXN4-207ENST00000471246 A0A1W2PPR1 153 aa1.18□□□□□ -2.22
UBXN4-207ENST00000471246 FSD2A1L4K1 749 aa1.18□□□□□ -2.22
UBXN4-207ENST00000471246 A6NCN8 305 aa1.18□□□□□ -2.22
UBXN4-207ENST00000471246 MPTX1A8MV57 137 aa1.18□□□□□ -2.22
UBXN4-207ENST00000471246 PI4K2BG5E9Z4 385 aa1.18□□□□□ -2.22
UBXN4-207ENST00000471246 EPHB6O15197 1021 aa1.18□□□□□ -2.22
UBXN4-207ENST00000471246 ADAMDEC1O15204 470 aa1.18□□□□□ -2.22
UBXN4-207ENST00000471246 CDK2AP2O75956 126 aa1.18□□□□□ -2.22
UBXN4-207ENST00000471246 IGHV3-13P01766 116 aa1.18□□□□□ -2.22
UBXN4-207ENST00000471246 VTNP04004 478 aa1.18□□□□□ -2.22
UBXN4-207ENST00000471246 SMIM18P0DKX4 95 aa1.18□□□□□ -2.22
UBXN4-207ENST00000471246 MPZP25189 248 aa1.18□□□□□ -2.22
UBXN4-207ENST00000471246 CSTF2P33240 577 aaKnown RBP eCLIP1.18□□□□□ -2.22
UBXN4-207ENST00000471246 PTGER3P43115 390 aa1.18□□□□□ -2.22
UBXN4-207ENST00000471246 MATR3P43243 847 aaKnown RBP eCLIP1.18□□□□□ -2.22
UBXN4-207ENST00000471246 RXRGP48443 463 aa1.18□□□□□ -2.22
UBXN4-207ENST00000471246 CDH13P55290 713 aa1.18□□□□□ -2.22
UBXN4-207ENST00000471246 TMEM50BP56557 158 aa1.18□□□□□ -2.22
UBXN4-207ENST00000471246 HNRNPKP61978 463 aaKnown RBP eCLIP1.18□□□□□ -2.22
UBXN4-207ENST00000471246 PSMC6P62333 389 aa1.18□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms