RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, human

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSH6-204	ENST00000445503	DRGX	A6NNA5	263 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	OR7A17	O14581	309 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	ASNA1	O43681	348 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	VIP	P01282	170 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	SLC11A1	P49279	550 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	SGSH	P51688	502 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	ATN1	P54259	1190 aa	Predicted RBP	11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	DEFA1	P59665	94 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	DEFA3	P59666	94 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	ELAVL2	Q12926	359 aa	Known RBP	11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	CDK5R2	Q13319	367 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	PTCHD3	Q3KNS1	767 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	DCP2	Q8IU60	420 aa	Known RBP	11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	SCML4	Q8N228	414 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	RPL3L	Q92901	407 aa	Known RBP	11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	SH3YL1	Q96HL8	342 aa	Predicted RBP	11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	OSBPL10	Q9BXB5	764 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	CEP44	Q9C0F1	390 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	ZNF510	Q9Y2H8	683 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	KRBA1	A5PL33	1030 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	MANSC4	A6NHS7	340 aa	Predicted RBP	11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	C5orf58	C9J3I9	102 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	SERPIND1	P05546	499 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	LCK	P06239	509 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	CHRM5	P08912	532 aa	Predicted RBP	11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	CCND3	P30281	292 aa	Predicted RBP	11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	SPAM1	P38567	509 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	EMX1	Q04741	257 aa	Predicted RBP	11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	CCDC85B	Q15834	202 aa	Predicted RBP	11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	CYP2U1	Q7Z449	544 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	LKAAEAR1	Q8TD35	194 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	UBE2F	Q969M7	185 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	DCSTAMP	Q9H295	470 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	CRISPLD1	Q9H336	500 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	TPK1	Q9H3S4	243 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	KCTD5	Q9NXV2	234 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	DLGAP4	Q9Y2H0	992 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	AP3M1	Q9Y2T2	418 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	PRSS21	Q9Y6M0	314 aa		11.58	□□□□□ -0.56
MSH6-204	ENST00000445503	ZFC3H1	O60293	1989 aa	Known RBP	11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	MAGEB17	A8MXT2	336 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	SEPT4	O43236	478 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	MED26	O95402	600 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	GBA	P04062	536 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	PAX3	P23760	479 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	HPCAL1	P37235	193 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	MAGEA10	P43363	369 aa	Predicted RBP	11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	CCL23	P55773	120 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	UBE3A	Q05086	875 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	NAE1	Q13564	534 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	CTU2	Q2VPK5	515 aa	Known RBP	11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	SNX20	Q7Z614	316 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	GALNT7	Q86SF2	657 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	TTC30B	Q8N4P2	665 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	AMER2	Q8N7J2	671 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	GTPBP3	Q969Y2	492 aa	Known RBP	11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	ZNF641	Q96N77	438 aa	Predicted RBP	11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	NTN4	Q9HB63	628 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	SYNDIG1L	A6NDD5	238 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	RPLP2	P05387	115 aa	Known RBP	11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	CSRP3	P50461	194 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	CDH12	P55289	794 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	TIAL1	Q01085	375 aa	Known RBP eCLIP	11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	GPR17	Q13304	367 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	XKR7	Q5GH72	579 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	SPANXN2	Q5MJ10	180 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	BTLA	Q7Z6A9	289 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	C11orf96	Q7Z7L8	435 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	RAET1E	Q8TD07	263 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	DPF3	Q92784	378 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	SH3KBP1	Q96B97	665 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	TMEM169	Q96HH4	297 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	HSH2D	Q96JZ2	352 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	VPS51	Q9UID3	782 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503		Q9Y3F1	56 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	C2orf78	A6NCI8	922 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	SLC22A1	O15245	554 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	TACR1	P25103	407 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	CD97	P48960	835 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	CRHR2	Q13324	411 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	SPDYE7P	Q495Y7	208 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	TRIB2	Q92519	343 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	PROX1	Q92786	737 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	CARS2	Q9HA77	564 aa	Known RBP	11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	HEBP1	Q9NRV9	189 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	EHD3	Q9NZN3	535 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	PNMA8C	A0A1B0GUJ8	204 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	TNFRSF11B	O00300	401 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	SAP18	O00422	153 aa	Known RBP	11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	EOMES	O95936	686 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	TNFRSF1B	P20333	461 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	ALDH9A1	P49189	494 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	PRKCZ	Q05513	592 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	NFATC2	Q13469	925 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	NKG7	Q16617	165 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	SUSD1	Q6UWL2	747 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	RBM23	Q86U06	439 aa	Known RBP	11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	TSPAN33	Q86UF1	283 aa		11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	C2orf73	Q8N5S3	287 aa	Predicted RBP	11.57	□□□□□ -0.56
MSH6-204	ENST00000445503	FOPNL	Q96NB1	174 aa		11.57	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms