RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 CRTC2Q53ET0 693 aaPredicted RBP7.05□□□□□ -1.28
VPS53-204ENST00000437048 SLC43A2Q8N370 569 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 PREBQ9HCU5 417 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 CLDN4O14493 209 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 NOBOXO60393 691 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 B4GALT4O60513 344 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 CKMP06732 381 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 NPTX1Q15818 432 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 NDUFAF5Q5TEU4 345 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 TWIST2Q8WVJ9 160 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 BTN2A3PQ96KV6 586 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 LENG8Q96PV6 779 aaPredicted RBP7.05□□□□□ -1.28
VPS53-204ENST00000437048 EBF3Q9H4W6 596 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 LIPT1Q9Y234 373 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 COLEC10Q9Y6Z7 277 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 C3P01024 1663 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 AGAP5A6NIR3 686 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 C1QTNF3-AMACRE9PGA6 284 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 SMLR1H3BR10 107 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 GRSF1Q12849 480 aaKnown RBP eCLIP7.05□□□□□ -1.284e-9■■■■■ 30.8
VPS53-204ENST00000437048 FAM162BQ5T6X4 162 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 UGT2A3Q6UWM9 527 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 SCML4Q8N228 414 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 GPRC5AQ8NFJ5 357 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 RNF128Q8TEB7 428 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 LPGAT1Q92604 370 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 NTAN1Q96AB6 310 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 MKRN2Q9H000 416 aaKnown RBP7.05□□□□□ -1.28
VPS53-204ENST00000437048 PIM2Q9P1W9 311 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 CNTNAP4Q9C0A0 1308 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 DAPL1A0PJW8 107 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 PKLRP30613 574 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 DEFA6Q01524 100 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 SH3D19Q5HYK7 790 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 IL23RQ5VWK5 629 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 FRRS1Q6ZNA5 592 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 CYP4V2Q6ZWL3 525 aaPredicted RBP7.05□□□□□ -1.28
VPS53-204ENST00000437048 CHPT1Q8WUD6 406 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 FCAMRQ8WWV6 532 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 SCRN2Q96FV2 425 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 TMEM165Q9HC07 324 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 ZNF81P51508 661 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 MECP2P51608 486 aaKnown RBP7.04□□□□□ -1.28
VPS53-204ENST00000437048 SP140Q13342 867 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 HNRNPDQ14103 355 aaKnown RBP7.04□□□□□ -1.28
VPS53-204ENST00000437048 CDNFQ49AH0 187 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 LCLAT1Q6UWP7 414 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 ACOT1Q86TX2 421 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 IQCF2Q8IXL9 164 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 FAM98AQ8NCA5 519 aaKnown RBP7.04□□□□□ -1.28
VPS53-204ENST00000437048 TSEN15Q8WW01 171 aaKnown RBP7.04□□□□□ -1.28
VPS53-204ENST00000437048 AGO4Q9HCK5 861 aaKnown RBP7.04□□□□□ -1.28
VPS53-204ENST00000437048 SLC35C2Q9NQQ7 365 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 DNMT3LQ9UJW3 386 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 POLR1CO15160 346 aaPredicted RBP7.04□□□□□ -1.28
VPS53-204ENST00000437048 NDST2P52849 883 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 ZIK1Q3SY52 487 aaPredicted RBP7.04□□□□□ -1.28
VPS53-204ENST00000437048 MIIPQ5JXC2 388 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 ATG9BQ674R7 924 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 CAND1Q86VP6 1230 aaKnown RBP7.04□□□□□ -1.28
VPS53-204ENST00000437048 ZSWIM9Q86XI8 627 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 SMAP2Q8WU79 429 aaPredicted RBP7.04□□□□□ -1.28
VPS53-204ENST00000437048 TMEM80Q96HE8 168 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 CDADC1Q9BWV3 514 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 PCDHB7Q9Y5E2 793 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 WASHC1A8K0Z3 465 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 WASH3PC4AMC7 463 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 TO15178 435 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 MMP12P39900 470 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 GLUD2P49448 558 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 FAM171BQ6P995 826 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 WASH2PQ6VEQ5 465 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 ARRDC4Q8NCT1 418 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 OR10T2Q8NGX3 314 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 CHST7Q9NS84 486 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 PPP4R1LQ9P1A2 415 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 TOR1BO14657 336 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 BMP2P12643 396 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 DNASE1P24855 282 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 NKX6-1P78426 367 aaPredicted RBP7.04□□□□□ -1.28
VPS53-204ENST00000437048 CDKL1Q00532 357 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 MEF2DQ14814 521 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 GRK1Q15835 563 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 KANSL1Q7Z3B3 1105 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 NUP54Q7Z3B4 507 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 C1orf216Q8TAB5 229 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 PHYHIPQ92561 330 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 SEC14L2O76054 403 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 GRK6P43250 576 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 COQ8AQ8NI60 647 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 GLT1D1Q96MS3 346 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 NIPAL2Q9H841 368 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 INPP5EQ9NRR6 644 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 CACFD1Q9UGQ2 172 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 LOC100130705A0A1B0GUX0 176 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 ZNF208O43345 1280 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 AK1P00568 194 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 PSEN2P49810 448 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 ADIGQ0VDE8 80 aa7.04□□□□□ -1.28
VPS53-204ENST00000437048 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms