RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 AHCTF1Q8WYP5 2266 aa20.95■□□□□ 0.94
CLN3-207ENST00000395653 KLK10O43240 276 aa20.95■□□□□ 0.94
CLN3-207ENST00000395653 CYP2A7P20853 494 aa20.95■□□□□ 0.94
CLN3-207ENST00000395653 OAS2P29728 719 aaKnown RBP20.95■□□□□ 0.94
CLN3-207ENST00000395653 GRTP1Q5TC63 336 aa20.95■□□□□ 0.94
CLN3-207ENST00000395653 NKAPQ8N5F7 415 aaKnown RBP20.95■□□□□ 0.94
CLN3-207ENST00000395653 OR8K5Q8NH50 307 aa20.95■□□□□ 0.94
CLN3-207ENST00000395653 DLG3Q92796 817 aa20.95■□□□□ 0.94
CLN3-207ENST00000395653 ZNF501Q96CX3 271 aaPredicted RBP20.95■□□□□ 0.94
CLN3-207ENST00000395653 TSPAN17Q96FV3 270 aa20.95■□□□□ 0.94
CLN3-207ENST00000395653 GPR22Q99680 433 aa20.95■□□□□ 0.94
CLN3-207ENST00000395653 FUT8Q9BYC5 575 aa20.95■□□□□ 0.94
CLN3-207ENST00000395653 FANCEQ9HB96 536 aa20.95■□□□□ 0.94
CLN3-207ENST00000395653 PILRAQ9UKJ1 303 aa20.95■□□□□ 0.94
CLN3-207ENST00000395653 ADAMTS6Q9UKP5 1117 aa20.95■□□□□ 0.94
CLN3-207ENST00000395653 NFU1Q9UMS0 254 aa20.95■□□□□ 0.94
CLN3-207ENST00000395653 SSUH2Q9Y2M2 353 aa20.95■□□□□ 0.94
CLN3-207ENST00000395653 MTO1Q9Y2Z2 717 aaKnown RBP20.95■□□□□ 0.94
CLN3-207ENST00000395653 A0A1W2PPV9 198 aa20.94■□□□□ 0.94
CLN3-207ENST00000395653 SLC16A8O95907 504 aa20.94■□□□□ 0.94
CLN3-207ENST00000395653 SYF2O95926 243 aaKnown RBP20.94■□□□□ 0.94
CLN3-207ENST00000395653 ITPKBP27987 946 aa20.94■□□□□ 0.94
CLN3-207ENST00000395653 SPRP35270 261 aaPredicted RBP20.94■□□□□ 0.94
CLN3-207ENST00000395653 PNLIPRP1P54315 467 aa20.94■□□□□ 0.94
CLN3-207ENST00000395653 SLC12A2P55011 1212 aa20.94■□□□□ 0.94
CLN3-207ENST00000395653 TLE3Q04726 772 aa20.94■□□□□ 0.94
CLN3-207ENST00000395653 SF1Q15637 639 aaKnown RBP20.94■□□□□ 0.94
CLN3-207ENST00000395653 GPR19Q15760 415 aa20.94■□□□□ 0.94
CLN3-207ENST00000395653 TMEM207Q6UWW9 146 aa20.94■□□□□ 0.94
CLN3-207ENST00000395653 MCOLN3Q8TDD5 553 aa20.94■□□□□ 0.94
CLN3-207ENST00000395653 SMPDL3AQ92484 453 aa20.94■□□□□ 0.94
CLN3-207ENST00000395653 CYTH2Q99418 400 aa20.94■□□□□ 0.94
CLN3-207ENST00000395653 KLHL25Q9H0H3 589 aa20.94■□□□□ 0.94
CLN3-207ENST00000395653 PARVBQ9HBI1 364 aa20.94■□□□□ 0.94
CLN3-207ENST00000395653 SDK2Q58EX2 2172 aa20.93■□□□□ 0.94
CLN3-207ENST00000395653 DSPP15924 2871 aaKnown RBP20.93■□□□□ 0.94
CLN3-207ENST00000395653 ESPNB1AK53 854 aa20.93■□□□□ 0.94
CLN3-207ENST00000395653 STK17BO94768 372 aa20.93■□□□□ 0.94
CLN3-207ENST00000395653 DLGAP3O95886 979 aa20.93■□□□□ 0.94
CLN3-207ENST00000395653 MAGP20916 626 aa20.93■□□□□ 0.94
CLN3-207ENST00000395653 FASTKQ14296 549 aaKnown RBP20.93■□□□□ 0.94
CLN3-207ENST00000395653 SLMAPQ14BN4 828 aa20.93■□□□□ 0.94
CLN3-207ENST00000395653 EFTUD2Q15029 972 aaKnown RBP eCLIP20.93■□□□□ 0.943e-6■■■■□ 22
CLN3-207ENST00000395653 TGIF1Q15583 401 aa20.93■□□□□ 0.94
CLN3-207ENST00000395653 ZIC1Q15915 447 aa20.93■□□□□ 0.94
CLN3-207ENST00000395653 CDHR3Q6ZTQ4 885 aa20.93■□□□□ 0.94
CLN3-207ENST00000395653 CEP97Q8IW35 865 aa20.93■□□□□ 0.94
CLN3-207ENST00000395653 OR2A1Q8NGT9 310 aa20.93■□□□□ 0.94
CLN3-207ENST00000395653 ZNF480Q8WV37 535 aa20.93■□□□□ 0.94
CLN3-207ENST00000395653 ANKRD7Q92527 254 aa20.93■□□□□ 0.94
CLN3-207ENST00000395653 CCDC138Q96M89 665 aa20.93■□□□□ 0.94
CLN3-207ENST00000395653 ULBP3Q9BZM4 244 aa20.93■□□□□ 0.94
CLN3-207ENST00000395653 ACSS3Q9H6R3 686 aa20.93■□□□□ 0.94
CLN3-207ENST00000395653 GPAMQ9HCL2 828 aa20.93■□□□□ 0.94
CLN3-207ENST00000395653 INTS7Q9NVH2 962 aaKnown RBP20.93■□□□□ 0.94
CLN3-207ENST00000395653 CAMSAP3Q9P1Y5 1249 aaPredicted RBP20.93■□□□□ 0.94
CLN3-207ENST00000395653 PDE10AQ9Y233 779 aa20.93■□□□□ 0.94
CLN3-207ENST00000395653 ATP1A2P50993 1020 aa20.92■□□□□ 0.94
CLN3-207ENST00000395653 MAP7Q14244 749 aa20.92■□□□□ 0.94
CLN3-207ENST00000395653 ZNF460Q14592 562 aa20.92■□□□□ 0.94
CLN3-207ENST00000395653 USP10Q14694 798 aaKnown RBP20.92■□□□□ 0.94
CLN3-207ENST00000395653 BROXQ5VW32 411 aa20.92■□□□□ 0.94
CLN3-207ENST00000395653 FAM60AQ9NP50 221 aa20.92■□□□□ 0.94
CLN3-207ENST00000395653 E7ENX8 843 aa20.91■□□□□ 0.94
CLN3-207ENST00000395653 RAD1O60671 282 aa20.91■□□□□ 0.94
CLN3-207ENST00000395653 WISP3O95389 354 aaPredicted RBP20.91■□□□□ 0.94
CLN3-207ENST00000395653 TIAF1O95411 115 aa20.91■□□□□ 0.94
CLN3-207ENST00000395653 ENO2P09104 434 aaPredicted RBP20.91■□□□□ 0.94
CLN3-207ENST00000395653 HIST1H2AGP0C0S8 130 aaPredicted RBP20.91■□□□□ 0.94
CLN3-207ENST00000395653 ZNF28P17035 718 aa20.91■□□□□ 0.94
CLN3-207ENST00000395653 HIST1H2ADP20671 130 aa20.91■□□□□ 0.94
CLN3-207ENST00000395653 IMPA1P29218 277 aa20.91■□□□□ 0.94
CLN3-207ENST00000395653 UCNP55089 124 aa20.91■□□□□ 0.94
CLN3-207ENST00000395653 TAP2Q03519 686 aa20.91■□□□□ 0.94
CLN3-207ENST00000395653 ZKSCAN8Q15776 578 aaPredicted RBP20.91■□□□□ 0.94
CLN3-207ENST00000395653 UBAP2Q5T6F2 1119 aaKnown RBP20.91■□□□□ 0.94
CLN3-207ENST00000395653 PWWP2BQ6NUJ5 590 aa20.91■□□□□ 0.94
CLN3-207ENST00000395653 FAM20CQ8IXL6 584 aa20.91■□□□□ 0.94
CLN3-207ENST00000395653 LRRC56Q8IYG6 542 aaPredicted RBP20.91■□□□□ 0.94
CLN3-207ENST00000395653 SYTL1Q8IYJ3 562 aa20.91■□□□□ 0.94
CLN3-207ENST00000395653 NLGN4XQ8N0W4 816 aa20.91■□□□□ 0.94
CLN3-207ENST00000395653 NLGN4YQ8NFZ3 816 aaPredicted RBP20.91■□□□□ 0.94
CLN3-207ENST00000395653 OR2L3Q8NG85 312 aa20.91■□□□□ 0.94
CLN3-207ENST00000395653 HNRNPLLQ8WVV9 542 aaKnown RBP20.91■□□□□ 0.94
CLN3-207ENST00000395653 NKD1Q969G9 470 aa20.91■□□□□ 0.94
CLN3-207ENST00000395653 HIST1H2AHQ96KK5 128 aa20.91■□□□□ 0.94
CLN3-207ENST00000395653 HIST1H2AJQ99878 128 aa20.91■□□□□ 0.94
CLN3-207ENST00000395653 H2AFJQ9BTM1 129 aa20.91■□□□□ 0.94
CLN3-207ENST00000395653 CAB39LQ9H9S4 337 aa20.91■□□□□ 0.94
CLN3-207ENST00000395653 KLK4Q9Y5K2 254 aa20.91■□□□□ 0.94
CLN3-207ENST00000395653 FAM155BO75949 473 aa20.9■□□□□ 0.94
CLN3-207ENST00000395653 KIAA0754O94854 1291 aa20.9■□□□□ 0.94
CLN3-207ENST00000395653 ACSL3O95573 720 aa20.9■□□□□ 0.94
CLN3-207ENST00000395653 STMN1P16949 149 aa20.9■□□□□ 0.94
CLN3-207ENST00000395653 PSMB5P28074 263 aa20.9■□□□□ 0.94
CLN3-207ENST00000395653 GABRA4P48169 554 aa20.9■□□□□ 0.94
CLN3-207ENST00000395653 AP1S2P56377 157 aa20.9■□□□□ 0.94
CLN3-207ENST00000395653 NAA25Q14CX7 972 aa20.9■□□□□ 0.94
CLN3-207ENST00000395653 PHKG1Q16816 387 aa20.9■□□□□ 0.94
CLN3-207ENST00000395653 TEX35Q5T0J7 233 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms