RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 GALNT13Q8IUC8 556 aa9.42□□□□□ -0.9
COL6A3-204ENST00000392003 FAM217AQ8IXS0 508 aa9.42□□□□□ -0.9
COL6A3-204ENST00000392003 ZFP28Q8NHY6 868 aa9.42□□□□□ -0.9
COL6A3-204ENST00000392003 RHBDF1Q96CC6 855 aa9.42□□□□□ -0.9
COL6A3-204ENST00000392003 UGT2B28Q9BY64 529 aa9.42□□□□□ -0.9
COL6A3-204ENST00000392003 SLC29A3Q9BZD2 475 aa9.42□□□□□ -0.9
COL6A3-204ENST00000392003 RDH14Q9HBH5 336 aa9.42□□□□□ -0.9
COL6A3-204ENST00000392003 ZFP14Q9HCL3 533 aa9.42□□□□□ -0.9
COL6A3-204ENST00000392003 DUS2Q9NX74 493 aaKnown RBP9.42□□□□□ -0.9
COL6A3-204ENST00000392003 ELOVL2Q9NXB9 296 aa9.42□□□□□ -0.9
COL6A3-204ENST00000392003 SMPD3Q9NY59 655 aaPredicted RBP9.42□□□□□ -0.9
COL6A3-204ENST00000392003 PKD2L2Q9NZM6 624 aa9.42□□□□□ -0.9
COL6A3-204ENST00000392003 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 GAPDHSO14556 408 aaPredicted RBP9.41□□□□□ -0.9
COL6A3-204ENST00000392003 EI24O14681 340 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 KIAA0355O15063 1070 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 CLDN9O95484 217 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 ALBP02768 609 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 CD70P32970 193 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 RPS9P46781 194 aaKnown RBP9.41□□□□□ -0.9
COL6A3-204ENST00000392003 ZFP36L2P47974 494 aaKnown RBP9.41□□□□□ -0.9
COL6A3-204ENST00000392003 GSSP48637 474 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 RPIAP49247 311 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 FPGSQ05932 587 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 ZNF697Q5TEC3 545 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 ZDHHC20Q5W0Z9 365 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 BORAQ6PGQ7 559 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 GAREM2Q75VX8 874 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 TSPAN33Q86UF1 283 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 LEMD2Q8NC56 503 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 OR8J3Q8NGG0 315 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 MAGEE2Q8TD90 523 aaPredicted RBP9.41□□□□□ -0.9
COL6A3-204ENST00000392003 ZFPM2Q8WW38 1151 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 BADQ92934 168 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 GIMAP5Q96F15 307 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 MTIF3Q9H2K0 278 aaKnown RBP9.41□□□□□ -0.9
COL6A3-204ENST00000392003 ZDHHC6Q9H6R6 413 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 LIN28AQ9H9Z2 209 aaKnown RBP9.41□□□□□ -0.9
COL6A3-204ENST00000392003 SMOXQ9NWM0 555 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 ZNHIT2Q9UHR6 403 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 ARPC4-TTLL3A0A0A6YYG9 625 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 LOC730098B7Z3J9 87 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 MANBAO00462 879 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 HAT1O14929 419 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 IL6P05231 212 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 MYF6P23409 242 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 CAPGP40121 348 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 NKX2-5P52952 324 aaPredicted RBP9.41□□□□□ -0.9
COL6A3-204ENST00000392003 SLC7A9P82251 487 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 HMGCS1Q01581 520 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 SEMG2Q02383 582 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 LAPTM5Q13571 262 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 C16orf72Q14CZ0 275 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 LRRC66Q68CR7 880 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 CRTC1Q6UUV9 634 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 UBE2R2Q712K3 238 aaPredicted RBP9.41□□□□□ -0.9
COL6A3-204ENST00000392003 SPRED1Q7Z699 444 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 TCAIMQ8N3R3 496 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 LIX1Q8N485 282 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 GALNT6Q8NCL4 622 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 PAPD5Q8NDF8 572 aaKnown RBP9.41□□□□□ -0.9
COL6A3-204ENST00000392003 OR2T12Q8NG77 320 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 UBTD2Q8WUN7 234 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 FIG4Q92562 907 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 RPF2Q9H7B2 306 aaKnown RBP9.41□□□□□ -0.9
COL6A3-204ENST00000392003 OLAHQ9NV23 265 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 C1orf109Q9NX04 203 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 RWDD3Q9Y3V2 267 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 TCRBV5S2A0A599 114 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 NPIPB15A6NHN6 443 aaPredicted RBP9.41□□□□□ -0.9
COL6A3-204ENST00000392003 GFRA2O00451 464 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 GNGT2O14610 69 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 GRM6O15303 877 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 GREM1O60565 184 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 POP4O95707 220 aaKnown RBP9.41□□□□□ -0.9
COL6A3-204ENST00000392003 MT-ND1P03886 318 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 BCAP31P51572 246 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 YBX1P67809 324 aaKnown RBP9.41□□□□□ -0.9
COL6A3-204ENST00000392003 CREB5Q02930 508 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 HSPA14Q0VDF9 509 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 CPSF6Q16630 551 aaKnown RBP eCLIP9.41□□□□□ -0.9
COL6A3-204ENST00000392003 FAM174BQ3ZCQ3 159 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 CEP78Q5JTW2 689 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 DGKKQ5KSL6 1271 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 C22orf39Q6P5X5 142 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 TTC23LQ6PF05 361 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 ABRAXAS1Q6UWZ7 409 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 DLEU7Q6UYE1 221 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 LPCAT2Q7L5N7 544 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 EPHX4Q8IUS5 362 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 CMTM8Q8IZV2 173 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 GPR26Q8NDV2 337 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 HDAC2Q92769 488 aaKnown RBP9.41□□□□□ -0.9
COL6A3-204ENST00000392003 MTFMTQ96DP5 389 aaKnown RBP9.41□□□□□ -0.9
COL6A3-204ENST00000392003 SCRN2Q96FV2 425 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 NTMT1Q9BV86 223 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 ZBP1Q9H171 429 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 SLC32A1Q9H598 525 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 ELOVL6Q9H5J4 265 aa9.41□□□□□ -0.9
COL6A3-204ENST00000392003 CFAP99D6REC4 459 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms