RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 EEF1AKMT2Q5JPI9 291 aaKnown RBP17.68■□□□□ 0.42
CLN3-202ENST00000355477 FIGLAQ6QHK4 219 aa17.68■□□□□ 0.42
CLN3-202ENST00000355477 FAM198BQ6UWH4 519 aa17.68■□□□□ 0.42
CLN3-202ENST00000355477 PCGF5Q86SE9 256 aa17.68■□□□□ 0.42
CLN3-202ENST00000355477 SYVN1Q86TM6 617 aa17.68■□□□□ 0.42
CLN3-202ENST00000355477 ABHD17AQ96GS6 310 aa17.68■□□□□ 0.42
CLN3-202ENST00000355477 PWWP2AQ96N64 755 aa17.68■□□□□ 0.42
CLN3-202ENST00000355477 EBNA1BP2Q99848 306 aaKnown RBP17.68■□□□□ 0.42
CLN3-202ENST00000355477 RAB11FIP5Q9BXF6 653 aa17.68■□□□□ 0.42
CLN3-202ENST00000355477 NLNQ9BYT8 704 aa17.68■□□□□ 0.42
CLN3-202ENST00000355477 FAM117AQ9C073 453 aa17.68■□□□□ 0.42
CLN3-202ENST00000355477 SLC7A5P2Q9GIP4 190 aa17.68■□□□□ 0.42
CLN3-202ENST00000355477 ZNF71Q9NQZ8 489 aaPredicted RBP17.68■□□□□ 0.42
CLN3-202ENST00000355477 IARS2Q9NSE4 1012 aaKnown RBP17.68■□□□□ 0.42
CLN3-202ENST00000355477 EURLQ9NYK6 297 aa17.68■□□□□ 0.42
CLN3-202ENST00000355477 CAMSAP3Q9P1Y5 1249 aaPredicted RBP17.68■□□□□ 0.42
CLN3-202ENST00000355477 PLCL2Q9UPR0 1127 aa17.68■□□□□ 0.42
CLN3-202ENST00000355477 MRFAP1Q9Y605 127 aa17.68■□□□□ 0.42
CLN3-202ENST00000355477 NBASA2RRP1 2371 aa17.67■□□□□ 0.42
CLN3-202ENST00000355477 PRRC2CQ9Y520 2896 aaKnown RBP17.67■□□□□ 0.42
CLN3-202ENST00000355477 PSIP1O75475 530 aaKnown RBP17.67■□□□□ 0.42
CLN3-202ENST00000355477 HBQ1P09105 142 aa17.67■□□□□ 0.42
CLN3-202ENST00000355477 RAB40ALP0C0E4 278 aa17.67■□□□□ 0.42
CLN3-202ENST00000355477 ERVK-10P10266 1014 aa17.67■□□□□ 0.42
CLN3-202ENST00000355477 GRIA3P42263 894 aa17.67■□□□□ 0.42
CLN3-202ENST00000355477 YBX1P67809 324 aaKnown RBP17.67■□□□□ 0.42
CLN3-202ENST00000355477 CUL1Q13616 776 aa17.67■□□□□ 0.42
CLN3-202ENST00000355477 CYP2A13Q16696 494 aa17.67■□□□□ 0.42
CLN3-202ENST00000355477 C1orf189Q5VU69 101 aa17.67■□□□□ 0.42
CLN3-202ENST00000355477 KCNMB4Q86W47 210 aa17.67■□□□□ 0.42
CLN3-202ENST00000355477 PTRH1Q86Y79 214 aaKnown RBP17.67■□□□□ 0.42
CLN3-202ENST00000355477 MCATQ8IVS2 390 aaKnown RBP17.67■□□□□ 0.42
CLN3-202ENST00000355477 LMNTD2Q8IXW0 634 aa17.67■□□□□ 0.42
CLN3-202ENST00000355477 ZNF655Q8N720 491 aaPredicted RBP17.67■□□□□ 0.42
CLN3-202ENST00000355477 HMGCLL1Q8TB92 370 aa17.67■□□□□ 0.42
CLN3-202ENST00000355477 CALML6Q8TD86 181 aa17.67■□□□□ 0.42
CLN3-202ENST00000355477 TRIM51Q9BSJ1 452 aa17.67■□□□□ 0.42
CLN3-202ENST00000355477 PLAC1Q9HBJ0 212 aa17.67■□□□□ 0.42
CLN3-202ENST00000355477 DHCR7Q9UBM7 475 aaKnown RBP17.67■□□□□ 0.42
CLN3-202ENST00000355477 AP1M2Q9Y6Q5 423 aa17.67■□□□□ 0.42
CLN3-202ENST00000355477 PCSK5Q92824 1860 aa17.67■□□□□ 0.42
CLN3-202ENST00000355477 PYCARD-AS1I3L0S3 204 aa17.66■□□□□ 0.42
CLN3-202ENST00000355477 ZSCAN9O15535 394 aaPredicted RBP17.66■□□□□ 0.42
CLN3-202ENST00000355477 SLC28A2O43868 658 aa17.66■□□□□ 0.42
CLN3-202ENST00000355477 TIAL1Q01085 375 aaKnown RBP eCLIP17.66■□□□□ 0.42
CLN3-202ENST00000355477 DR1Q01658 176 aa17.66■□□□□ 0.42
CLN3-202ENST00000355477 BBS9Q3SYG4 887 aa17.66■□□□□ 0.42
CLN3-202ENST00000355477 HP1BP3Q5SSJ5 553 aaPredicted RBP17.66■□□□□ 0.42
CLN3-202ENST00000355477 CYHR1Q6ZMK1 362 aa17.66■□□□□ 0.42
CLN3-202ENST00000355477 SYDE1Q6ZW31 735 aaPredicted RBP17.66■□□□□ 0.42
CLN3-202ENST00000355477 PRICKLE2Q7Z3G6 844 aa17.66■□□□□ 0.42
CLN3-202ENST00000355477 OR2A1Q8NGT9 310 aa17.66■□□□□ 0.42
CLN3-202ENST00000355477 OR9A1PQ8NGU1 263 aa17.66■□□□□ 0.42
CLN3-202ENST00000355477 MAGEC3Q8TD91 643 aa17.66■□□□□ 0.42
CLN3-202ENST00000355477 KCNJ9Q92806 393 aa17.66■□□□□ 0.42
CLN3-202ENST00000355477 GBP5Q96PP8 586 aa17.66■□□□□ 0.42
CLN3-202ENST00000355477 GPR21Q99679 349 aa17.66■□□□□ 0.42
CLN3-202ENST00000355477 MIPEPQ99797 713 aa17.66■□□□□ 0.42
CLN3-202ENST00000355477 DPH2Q9BQC3 489 aaPredicted RBP17.66■□□□□ 0.42
CLN3-202ENST00000355477 CCDC68Q9H2F9 335 aa17.66■□□□□ 0.42
CLN3-202ENST00000355477 KLHL42Q9P2K6 505 aa17.66■□□□□ 0.42
CLN3-202ENST00000355477 TCFL5Q9UL49 500 aa17.66■□□□□ 0.42
CLN3-202ENST00000355477 MAN2B2Q9Y2E5 1009 aa17.66■□□□□ 0.42
CLN3-202ENST00000355477 DHRS7Q9Y394 339 aa17.66■□□□□ 0.42
CLN3-202ENST00000355477 FLNCQ14315 2725 aa17.66■□□□□ 0.42
CLN3-202ENST00000355477 K7EM74 188 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 TP73O15350 636 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 TTI1O43156 1089 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 SUV39H1O43463 412 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 NRP2O60462 931 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 CTSVO60911 334 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 ATXN8OSP0DMR3 200 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 ERGP11308 486 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 GABRB3P28472 473 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 GCGRP47871 477 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 PMS2P54278 862 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 MORF4L2Q15014 288 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 NCF4Q15080 339 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 SPANXN3Q5MJ09 141 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 RHBDD2Q6NTF9 364 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 HIBCHQ6NVY1 386 aaPredicted RBP17.65■□□□□ 0.42
CLN3-202ENST00000355477 TLDC1Q6P9B6 456 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 NEK10Q6ZWH5 1172 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 RAB42Q8N4Z0 105 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 C2CD4AQ8NCU7 369 aaPredicted RBP17.65■□□□□ 0.42
CLN3-202ENST00000355477 OR2L3Q8NG85 312 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 C9orf43Q8TAL5 461 aaPredicted RBP17.65■□□□□ 0.42
CLN3-202ENST00000355477 CD200R1Q8TD46 325 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 ADAMTS17Q8TE56 1095 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 SEC14L1Q92503 715 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 INPP5DQ92835 1189 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 ZUFSPQ96AP4 578 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 PKP4Q99569 1192 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 WDR83Q9BRX9 315 aaKnown RBP17.65■□□□□ 0.42
CLN3-202ENST00000355477 FAM167BQ9BTA0 163 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 AARSD1Q9BTE6 412 aaKnown RBP17.65■□□□□ 0.42
CLN3-202ENST00000355477 TRIM55Q9BYV6 548 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 INTS7Q9NVH2 962 aaKnown RBP17.65■□□□□ 0.42
CLN3-202ENST00000355477 IRAK4Q9NWZ3 460 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 SPATA7Q9P0W8 599 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms