RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 S1PR5Q9H228 398 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 LRRC4Q9HBW1 653 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 LHX9Q9NQ69 397 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 STARD7Q9NQZ5 370 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 ENTPD7Q9NQZ7 604 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 IARS2Q9NSE4 1012 aaKnown RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 SMOXQ9NWM0 555 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 ASIC5Q9NY37 505 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SLC25A37Q9NYZ2 338 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 STX18Q9P2W9 335 aaKnown RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 DCDC2Q9UHG0 476 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SLC23A1Q9UHI7 598 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 VPS51Q9UID3 782 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 CDH22Q9UJ99 828 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 C15orf41Q9Y2V0 281 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 RNF11Q9Y3C5 154 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 CEP83Q9Y592 693 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 ATG2BQ96BY7 2078 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SCN2AQ99250 2005 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 CSMD2Q7Z408 3487 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 A0A096LPK6 155 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 PRORSD1PA6NEY8 169 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 ANKRD66B4E2M5 251 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 C4orf51C9J302 202 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 EBAG9O00559 213 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 NDC80O14777 642 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 PHGDHO43175 533 aaKnown RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 FOXS1O43638 330 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 RNASEH1O60930 286 aaKnown RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 TADA2AO75478 443 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 GPC4O75487 556 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 PGLSO95336 258 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 LY86O95711 162 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SPATA31D3P0C874 917 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 KITP10721 976 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SRCP12931 536 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 CSF2RAP15509 400 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 CALB2P22676 271 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 CA4P22748 312 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 CTSSP25774 331 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 YWHAQP27348 245 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SLC8A1P32418 973 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 HMGCLP35914 325 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 AGTR2P50052 363 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SERPINB8P50452 374 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 AQP5P55064 265 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SESN2P58004 480 aaPredicted RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 YBEYP58557 167 aaPredicted RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 TLE2Q04725 743 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SF3A3Q12874 501 aaKnown RBP eCLIP2.26□□□□□ -2.051e-6■■■□□ 15.6
VPS54-202ENST00000354504 LMAN2Q12907 356 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 KLF10Q13118 480 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 ADAM15Q13444 863 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 GALNT3Q14435 633 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 POU6F1Q14863 301 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 KPNB1Q14974 876 aaKnown RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 CNN3Q15417 329 aaKnown RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 EEF1AKMT2Q5JPI9 291 aaKnown RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 ETV3LQ6ZN32 361 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SPATA31D4Q6ZUB0 917 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SYVN1Q86TM6 617 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 TSPAN33Q86UF1 283 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 MAP7D3Q8IWC1 876 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 BBS7Q8IWZ6 715 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 FBXO15Q8NCQ5 510 aaPredicted RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 OR2A12Q8NGT7 310 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 FIBINQ8TAL6 211 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 WDR20Q8TBZ3 569 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 PROKR1Q8TCW9 393 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 UCMAQ8WVF2 138 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 PPM1EQ8WY54 764 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 RHBDF1Q96CC6 855 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 TBATAQ96M53 351 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 LENG8Q96PV6 779 aaPredicted RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 OR4K3Q96R72 315 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SELENOSQ9BQE4 189 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 FUZQ9BT04 418 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 CPEB1Q9BZB8 566 aaKnown RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 CENPHQ9H3R5 247 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 FBXO44Q9H4M3 255 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 WDR55Q9H6Y2 383 aaPredicted RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 VPS37BQ9H9H4 285 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 NMRAL1Q9HBL8 299 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 MAGEE1Q9HCI5 957 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 FBRSL1Q9HCM7 1045 aaKnown RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 IL26Q9NPH9 171 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 HPS4Q9NQG7 708 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 MAN1C1Q9NR34 630 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SDR39U1Q9NRG7 319 aaPredicted RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 NMRK1Q9NWW6 199 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SIRT5Q9NXA8 310 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 BCCIPQ9P287 314 aaKnown RBP eCLIP2.26□□□□□ -2.05
VPS54-202ENST00000354504 XPR1Q9UBH6 696 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 UXTQ9UBK9 157 aaPredicted RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 GIMAP2Q9UG22 337 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 UTS2RQ9UKP6 389 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 STAP1Q9ULZ2 295 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SLC45A2Q9UMX9 530 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 LZTS1Q9Y250 596 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 RUVBL1Q9Y265 456 aaKnown RBP2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms