RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 FBXO25Q8TCJ0 367 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 MAGEC3Q8TD91 643 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 TTC9Q92623 222 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 RAB11FIP5Q9BXF6 653 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 SLC12A9Q9BXP2 914 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 CHRNA10Q9GZZ6 450 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 SYTL2Q9HCH5 934 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 IL17BQ9UHF5 180 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 KLHL20Q9Y2M5 609 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 PSAT1Q9Y617 370 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 H3BMH7 237 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 GFYI3L273 518 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 TERTO14746 1132 aaKnown RBP15.25■□□□□ 0.03
CLN3-201ENST00000333496 SCRG1O75711 98 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 CBSLP0DN79 551 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 ERGP11308 486 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 ENO3P13929 434 aaPredicted RBP15.25■□□□□ 0.03
CLN3-201ENST00000333496 MAGP20916 626 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 MCM3P25205 808 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 PSMB5P28074 263 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 CBSP35520 551 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 PLTPP55058 493 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 CYP4F2P78329 520 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 SLC7A5Q01650 507 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 DEFB110Q30KQ9 67 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 SOWAHCQ53LP3 525 aaPredicted RBP15.25■□□□□ 0.03
CLN3-201ENST00000333496 PIWIL4Q7Z3Z4 852 aaKnown RBP15.25■□□□□ 0.03
CLN3-201ENST00000333496 TMEM126BQ8IUX1 230 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 NOA1Q8NC60 698 aaKnown RBP15.25■□□□□ 0.03
CLN3-201ENST00000333496 ASB11Q8WXH4 323 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 TCTN2Q96GX1 697 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 LRRC1Q9BTT6 524 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 RAB17Q9H0T7 212 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 GPN2Q9H9Y4 310 aaPredicted RBP15.25■□□□□ 0.03
CLN3-201ENST00000333496 SAYSD1Q9NPB0 183 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 LHX9Q9NQ69 397 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 SMYD2Q9NRG4 433 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 TAS2R13Q9NYV9 303 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 MYO1CO00159 1063 aa15.24■□□□□ 0.03
CLN3-201ENST00000333496 EIF3HO15372 352 aaKnown RBP eCLIP15.24■□□□□ 0.03
CLN3-201ENST00000333496 CTSBP07858 339 aa15.24■□□□□ 0.03
CLN3-201ENST00000333496 OAS2P29728 719 aaKnown RBP15.24■□□□□ 0.03
CLN3-201ENST00000333496 SSTR1P30872 391 aa15.24■□□□□ 0.03
CLN3-201ENST00000333496 MGAT5Q09328 741 aa15.24■□□□□ 0.03
CLN3-201ENST00000333496 CYP2A13Q16696 494 aa15.24■□□□□ 0.03
CLN3-201ENST00000333496 PAQR3Q6TCH7 311 aa15.24■□□□□ 0.03
CLN3-201ENST00000333496 CAPN12Q6ZSI9 719 aa15.24■□□□□ 0.03
CLN3-201ENST00000333496 DNAJC22Q8N4W6 341 aa15.24■□□□□ 0.03
CLN3-201ENST00000333496 FBXO15Q8NCQ5 510 aaPredicted RBP15.24■□□□□ 0.03
CLN3-201ENST00000333496 OR2A1Q8NGT9 310 aa15.24■□□□□ 0.03
CLN3-201ENST00000333496 PYROXD1Q8WU10 500 aa15.24■□□□□ 0.03
CLN3-201ENST00000333496 EEF1AKMT1Q8WVE0 214 aa15.24■□□□□ 0.03
CLN3-201ENST00000333496 DLG3Q92796 817 aa15.24■□□□□ 0.03
CLN3-201ENST00000333496 SLC22A18Q96BI1 424 aa15.24■□□□□ 0.03
CLN3-201ENST00000333496 SLC45A3Q96JT2 553 aa15.24■□□□□ 0.03
CLN3-201ENST00000333496 UBL7Q96S82 380 aaPredicted RBP15.24■□□□□ 0.03
CLN3-201ENST00000333496 PKP4Q99569 1192 aa15.24■□□□□ 0.03
CLN3-201ENST00000333496 FANCEQ9HB96 536 aa15.24■□□□□ 0.03
CLN3-201ENST00000333496 SPATA7Q9P0W8 599 aa15.24■□□□□ 0.03
CLN3-201ENST00000333496 TRMT6Q9UJA5 497 aaKnown RBP15.24■□□□□ 0.03
CLN3-201ENST00000333496 CROTQ9UKG9 612 aa15.24■□□□□ 0.03
CLN3-201ENST00000333496 PADI1Q9ULC6 663 aa15.24■□□□□ 0.03
CLN3-201ENST00000333496 PCDHB3Q9Y5E6 796 aa15.24■□□□□ 0.03
CLN3-201ENST00000333496 MRPS18BQ9Y676 258 aaKnown RBP15.24■□□□□ 0.03
CLN3-201ENST00000333496 CCDC151A5D8V7 595 aa15.23■□□□□ 0.03
CLN3-201ENST00000333496 EIF3FO00303 357 aaPredicted RBP15.23■□□□□ 0.03
CLN3-201ENST00000333496 MAP3K7O43318 606 aa15.23■□□□□ 0.03
CLN3-201ENST00000333496 CPNE3O75131 537 aaKnown RBP15.23■□□□□ 0.03
CLN3-201ENST00000333496 PIAS1O75925 651 aa15.23■□□□□ 0.03
CLN3-201ENST00000333496 CATP04040 527 aaKnown RBP15.23■□□□□ 0.03
CLN3-201ENST00000333496 TUBBP07437 444 aa15.23■□□□□ 0.03
CLN3-201ENST00000333496 SKIV2L2P42285 1042 aaKnown RBP15.23■□□□□ 0.03
CLN3-201ENST00000333496 YBX1P67809 324 aaKnown RBP15.23■□□□□ 0.03
CLN3-201ENST00000333496 RHDQ02161 417 aa15.23■□□□□ 0.03
CLN3-201ENST00000333496 GPS2Q13227 327 aa15.23■□□□□ 0.03
CLN3-201ENST00000333496 SF1Q15637 639 aaKnown RBP15.23■□□□□ 0.03
CLN3-201ENST00000333496 HECTD2Q5U5R9 776 aa15.23■□□□□ 0.03
CLN3-201ENST00000333496 FCRL6Q6DN72 434 aa15.23■□□□□ 0.03
CLN3-201ENST00000333496 UGT3A1Q6NUS8 523 aa15.23■□□□□ 0.03
CLN3-201ENST00000333496 FAM199XQ6PEV8 388 aaPredicted RBP15.23■□□□□ 0.03
CLN3-201ENST00000333496 ZNF517Q6ZMY9 492 aaPredicted RBP15.23■□□□□ 0.03
CLN3-201ENST00000333496 OLFM1Q99784 485 aa15.23■□□□□ 0.03
CLN3-201ENST00000333496 MCMBPQ9BTE3 642 aa15.23■□□□□ 0.03
CLN3-201ENST00000333496 ZFATQ9P243 1243 aa15.23■□□□□ 0.03
CLN3-201ENST00000333496 SERTAD3Q9UJW9 196 aa15.23■□□□□ 0.03
CLN3-201ENST00000333496 CACNA1GO43497 2377 aa15.23■□□□□ 0.03
CLN3-201ENST00000333496 BOD1L1Q8NFC6 3051 aa15.22■□□□□ 0.03
CLN3-201ENST00000333496 ESYT3A0FGR9 886 aa15.22■□□□□ 0.03
CLN3-201ENST00000333496 SLC16A8O95907 504 aa15.22■□□□□ 0.03
CLN3-201ENST00000333496 C1QAP02745 245 aa15.22■□□□□ 0.03
CLN3-201ENST00000333496 MT-ND3P03897 115 aa15.22■□□□□ 0.03
CLN3-201ENST00000333496 CCNYL3P0C7X3 344 aa15.22■□□□□ 0.03
CLN3-201ENST00000333496 FDXRP22570 491 aa15.22■□□□□ 0.03
CLN3-201ENST00000333496 DLSTP36957 453 aa15.22■□□□□ 0.03
CLN3-201ENST00000333496 C8orf74Q6P047 294 aa15.22■□□□□ 0.03
CLN3-201ENST00000333496 FIGLAQ6QHK4 219 aa15.22■□□□□ 0.03
CLN3-201ENST00000333496 SUSD1Q6UWL2 747 aa15.22■□□□□ 0.03
CLN3-201ENST00000333496 ZC3HC1Q86WB0 502 aaKnown RBP15.22■□□□□ 0.03
CLN3-201ENST00000333496 MMGT1Q8N4V1 131 aa15.22■□□□□ 0.03
CLN3-201ENST00000333496 RAB42Q8N4Z0 105 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms