RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 VLDLRP98155 873 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 HMGCS1Q01581 520 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 PDE12Q6L8Q7 609 aaKnown RBP16.92■□□□□ 0.3
SHANK1-201ENST00000293441 TMEM110Q86TL2 294 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 GKN2Q86XP6 184 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 NXPE1Q8N323 547 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 AK5Q9Y6K8 562 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 TFECO14948 347 aaPredicted RBP16.92■□□□□ 0.3
SHANK1-201ENST00000293441 MAGP20916 626 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 SEPHS1P49903 392 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 XIAPP98170 497 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 ARHGAP22Q7Z5H3 698 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 PIM3Q86V86 326 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 OR6K6Q8NGW6 343 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 TVP23BQ9NYZ1 205 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 RBM47A0AV96 593 aaKnown RBP16.91■□□□□ 0.3
SHANK1-201ENST00000293441 MTMR11A4FU01 709 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 PLK4O00444 970 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 ZNF208O43345 1280 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 NOBOXO60393 691 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 TMEM63AO94886 807 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 MAPK14Q16539 360 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 SLC9B1Q4ZJI4 515 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 ARHGAP40Q5TG30 622 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.91■□□□□ 0.3
SHANK1-201ENST00000293441 CAMKVQ8NCB2 501 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 GLB1L3Q8NCI6 653 aaPredicted RBP16.91■□□□□ 0.3
SHANK1-201ENST00000293441 SLC35A5Q9BS91 424 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 MKKSQ9NPJ1 570 aaPredicted RBP16.91■□□□□ 0.3
SHANK1-201ENST00000293441 A0A1W2PQ72 361 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 NEMP2A6NFY4 417 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 KDELR3O43731 214 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 PCDHGA12O60330 932 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 PSMA1P25786 263 aaKnown RBP16.91■□□□□ 0.3
SHANK1-201ENST00000293441 SDC2P34741 201 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 CBR4Q8N4T8 237 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 SLC2A6Q9UGQ3 507 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 MPZL2O60487 215 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 NOS1APO75052 506 aaPredicted RBP16.91■□□□□ 0.3
SHANK1-201ENST00000293441 GPIP06744 558 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 SLC5A9Q2M3M2 681 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 MS4A13Q5J8X5 152 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 FAM13CQ8NE31 585 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 C8orf48Q96LL4 319 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 TMLHEQ9NVH6 421 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 KCNE1P15382 129 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 RALGPS1Q5JS13 557 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 GAL3ST1Q99999 423 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 ITM2CQ9NQX7 267 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 ZCCHC3Q9NUD5 404 aaKnown RBP16.91■□□□□ 0.3
SHANK1-201ENST00000293441 UBAP1Q9NZ09 502 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 DNM1LO00429 736 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 KHNYNO15037 678 aaKnown RBP16.91■□□□□ 0.3
SHANK1-201ENST00000293441 CXCR1P25024 350 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 KCTD8Q6ZWB6 473 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 TDRPQ86YL5 185 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 TBX5Q99593 518 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 SLC32A1Q9H598 525 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 TBC1D17Q9HA65 648 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 SERINC1Q9NRX5 453 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 LMO7Q8WWI1 1683 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 PITPNM1O00562 1244 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 SIX3O95343 332 aaPredicted RBP16.91■□□□□ 0.3
SHANK1-201ENST00000293441 MXD1Q05195 221 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 ZNF358Q9NW07 568 aa16.91■□□□□ 0.3
SHANK1-201ENST00000293441 ZNF726A6NNF4 738 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 SNAI1O95863 264 aaPredicted RBP16.9■□□□□ 0.3
SHANK1-201ENST00000293441 SOD2P04179 222 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 CSTF2P33240 577 aaKnown RBP eCLIP16.9■□□□□ 0.3
SHANK1-201ENST00000293441 CLCN4P51793 760 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 JAG1P78504 1218 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 TXNRD3NBQ6F5E7 133 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 THOC6Q86W42 341 aaKnown RBP16.9■□□□□ 0.3
SHANK1-201ENST00000293441 MARK1Q9P0L2 795 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 RPL26L1Q9UNX3 145 aaKnown RBP16.9■□□□□ 0.3
SHANK1-201ENST00000293441 FAM234BA2RU67 622 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 C22orf39Q6P5X5 142 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 BANPQ8N9N5 519 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 PRORSD1PA6NEY8 169 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 CSNK2A2P19784 350 aaPredicted RBP16.9■□□□□ 0.3
SHANK1-201ENST00000293441 IMPDH1P20839 514 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 CDCA2Q69YH5 1023 aaPredicted RBP16.9■□□□□ 0.3
SHANK1-201ENST00000293441 ZZZ3Q8IYH5 903 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 SNED1Q8TER0 1413 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 CAPN14A8MX76 684 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 ANKRD66B4E2M5 251 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 F2P00734 622 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 NAT8LQ8N9F0 302 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 TRIM2Q9C040 744 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 ABCC6O95255 1503 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 PRAMEF12O95522 483 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 BCAP31P51572 246 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 CREB5Q02930 508 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 LY6G5CQ5SRR4 150 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 SVOPLQ8N434 492 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 IRF7Q92985 503 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 CMTM7Q96FZ5 175 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 SSU72Q9NP77 194 aaKnown RBP16.9■□□□□ 0.3
SHANK1-201ENST00000293441 IFT46Q9NQC8 304 aa16.9■□□□□ 0.3
SHANK1-201ENST00000293441 GDAP2Q9NXN4 497 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms