RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 STK32CQ86UX6 486 aa19.52■□□□□ 0.72
VPS53-201ENST00000291074 HS3ST5Q8IZT8 346 aa19.52■□□□□ 0.72
VPS53-201ENST00000291074 NCLNQ969V3 563 aa19.52■□□□□ 0.72
VPS53-201ENST00000291074 MRGPRX3Q96LB0 322 aa19.52■□□□□ 0.72
VPS53-201ENST00000291074 KAT8Q9H7Z6 458 aaKnown RBP19.52■□□□□ 0.72
VPS53-201ENST00000291074 CD320Q9NPF0 282 aa19.52■□□□□ 0.72
VPS53-201ENST00000291074 CARNS1A5YM72 827 aa19.52■□□□□ 0.72
VPS53-201ENST00000291074 EFCAB14O75071 495 aa19.52■□□□□ 0.72
VPS53-201ENST00000291074 PRKD3O94806 890 aa19.52■□□□□ 0.72
VPS53-201ENST00000291074 BMP10O95393 424 aa19.52■□□□□ 0.72
VPS53-201ENST00000291074 TIMP2P16035 220 aa19.52■□□□□ 0.72
VPS53-201ENST00000291074 HNMTP50135 292 aa19.52■□□□□ 0.72
VPS53-201ENST00000291074 ARSFP54793 590 aa19.52■□□□□ 0.72
VPS53-201ENST00000291074 PFN3P60673 137 aa19.52■□□□□ 0.72
VPS53-201ENST00000291074 ADARB1P78563 741 aaKnown RBP19.52■□□□□ 0.72
VPS53-201ENST00000291074 ABRQ12979 859 aa19.52■□□□□ 0.72
VPS53-201ENST00000291074 CBX2Q14781 532 aaPredicted RBP19.52■□□□□ 0.72
VPS53-201ENST00000291074 GALNT13Q8IUC8 556 aa19.52■□□□□ 0.72
VPS53-201ENST00000291074 L3MBTL4Q8NA19 623 aa19.52■□□□□ 0.72
VPS53-201ENST00000291074 OR10Q1Q8NGQ4 319 aa19.52■□□□□ 0.72
VPS53-201ENST00000291074 ING5Q8WYH8 240 aa19.52■□□□□ 0.72
VPS53-201ENST00000291074 CPPED1Q9BRF8 314 aaPredicted RBP19.52■□□□□ 0.72
VPS53-201ENST00000291074 PRSS23O95084 383 aa19.51■□□□□ 0.71
VPS53-201ENST00000291074 PFKLP17858 780 aa19.51■□□□□ 0.71
VPS53-201ENST00000291074 POLR2EP19388 210 aaKnown RBP19.51■□□□□ 0.71
VPS53-201ENST00000291074 CD22P20273 847 aa19.51■□□□□ 0.71
VPS53-201ENST00000291074 PREPP48147 710 aa19.51■□□□□ 0.71
VPS53-201ENST00000291074 CTSCP53634 463 aa19.51■□□□□ 0.71
VPS53-201ENST00000291074 DYNC1I2Q13409 638 aaKnown RBP19.51■□□□□ 0.71
VPS53-201ENST00000291074 ZNF77Q15935 545 aa19.51■□□□□ 0.71
VPS53-201ENST00000291074 CCSMST1Q4G0I0 132 aa19.51■□□□□ 0.71
VPS53-201ENST00000291074 EEF1AKMT2Q5JPI9 291 aaKnown RBP19.51■□□□□ 0.71
VPS53-201ENST00000291074 ZNF697Q5TEC3 545 aa19.51■□□□□ 0.71
VPS53-201ENST00000291074 ANKRD34AQ69YU3 496 aa19.51■□□□□ 0.71
VPS53-201ENST00000291074 ABRAXAS1Q6UWZ7 409 aa19.51■□□□□ 0.71
VPS53-201ENST00000291074 NECAB2Q7Z6G3 386 aa19.51■□□□□ 0.71
VPS53-201ENST00000291074 PATL1Q86TB9 770 aaKnown RBP19.51■□□□□ 0.71
VPS53-201ENST00000291074 MICU2Q8IYU8 434 aa19.51■□□□□ 0.71
VPS53-201ENST00000291074 MCOLN3Q8TDD5 553 aa19.51■□□□□ 0.71
VPS53-201ENST00000291074 SLC47A1Q96FL8 570 aa19.51■□□□□ 0.71
VPS53-201ENST00000291074 CYP2A6P11509 494 aaPredicted RBP19.51■□□□□ 0.71
VPS53-201ENST00000291074 MYCLP1P12525 358 aaPredicted RBP19.51■□□□□ 0.71
VPS53-201ENST00000291074 ZNF30P17039 623 aa19.51■□□□□ 0.71
VPS53-201ENST00000291074 SLC14A1Q13336 389 aa19.51■□□□□ 0.71
VPS53-201ENST00000291074 FRG2Q64ET8 278 aa19.51■□□□□ 0.71
VPS53-201ENST00000291074 LPCAT2Q7L5N7 544 aa19.51■□□□□ 0.71
VPS53-201ENST00000291074 CHST15Q7LFX5 561 aaPredicted RBP19.51■□□□□ 0.71
VPS53-201ENST00000291074 CLEC4FQ8N1N0 589 aa19.51■□□□□ 0.71
VPS53-201ENST00000291074 FRG2BQ96QU4 278 aa19.51■□□□□ 0.71
VPS53-201ENST00000291074 RSL24D1Q9UHA3 163 aaKnown RBP19.51■□□□□ 0.71
VPS53-201ENST00000291074 ITM2BQ9Y287 266 aa19.51■□□□□ 0.71
VPS53-201ENST00000291074 A0A087WXM4 84 aa19.5■□□□□ 0.71
VPS53-201ENST00000291074 ARHGEF33A8MVX0 844 aa19.5■□□□□ 0.71
VPS53-201ENST00000291074 CFAP99D6REC4 459 aa19.5■□□□□ 0.71
VPS53-201ENST00000291074 TSPAN6O43657 245 aa19.5■□□□□ 0.71
VPS53-201ENST00000291074 PTPN6P29350 595 aa19.5■□□□□ 0.71
VPS53-201ENST00000291074 EPHA5P54756 1037 aa19.5■□□□□ 0.71
VPS53-201ENST00000291074 SP140Q13342 867 aa19.5■□□□□ 0.71
VPS53-201ENST00000291074 DAG1Q14118 895 aa19.5■□□□□ 0.71
VPS53-201ENST00000291074 SF1Q15637 639 aaKnown RBP19.5■□□□□ 0.71
VPS53-201ENST00000291074 OR4F3Q6IEY1 312 aa19.5■□□□□ 0.71
VPS53-201ENST00000291074 USP51Q70EK9 711 aa19.5■□□□□ 0.71
VPS53-201ENST00000291074 AADATQ8N5Z0 425 aa19.5■□□□□ 0.71
VPS53-201ENST00000291074 CMTM7Q96FZ5 175 aa19.5■□□□□ 0.71
VPS53-201ENST00000291074 UGT2B28Q9BY64 529 aa19.5■□□□□ 0.71
VPS53-201ENST00000291074 KCNH6Q9H252 994 aa19.5■□□□□ 0.71
VPS53-201ENST00000291074 LTB4R2Q9NPC1 389 aa19.5■□□□□ 0.71
VPS53-201ENST00000291074 CXXC1Q9P0U4 656 aaPredicted RBP19.5■□□□□ 0.71
VPS53-201ENST00000291074 ALBP02768 609 aa19.5■□□□□ 0.71
VPS53-201ENST00000291074 ALPLP05186 524 aa19.5■□□□□ 0.71
VPS53-201ENST00000291074 PTPN2P17706 415 aa19.5■□□□□ 0.71
VPS53-201ENST00000291074 ALDH3A2P51648 485 aa19.5■□□□□ 0.71
VPS53-201ENST00000291074 DDX39BQ13838 428 aaKnown RBP19.5■□□□□ 0.71
VPS53-201ENST00000291074 PON2Q15165 354 aa19.5■□□□□ 0.71
VPS53-201ENST00000291074 HENMT1Q5T8I9 393 aaKnown RBP19.5■□□□□ 0.71
VPS53-201ENST00000291074 SPRED2Q7Z698 418 aa19.5■□□□□ 0.71
VPS53-201ENST00000291074 FAM120BQ96EK7 910 aaKnown RBP19.5■□□□□ 0.71
VPS53-201ENST00000291074 SMURF2Q9HAU4 748 aa19.5■□□□□ 0.71
VPS53-201ENST00000291074 CST1P01037 141 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 PRPS2P11908 318 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 AMD1P17707 334 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 ARHGAP15Q53QZ3 475 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 LRIF1Q5T3J3 769 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 TTC23LQ6PF05 361 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 ZNF551Q7Z340 670 aaPredicted RBP19.49■□□□□ 0.71
VPS53-201ENST00000291074 PLPP6Q8IY26 295 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 MRPL43Q8N983 215 aaKnown RBP19.49■□□□□ 0.71
VPS53-201ENST00000291074 NETO1Q8TDF5 533 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 ASZ1Q8WWH4 475 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 CLP1Q92989 425 aaKnown RBP19.49■□□□□ 0.71
VPS53-201ENST00000291074 MUS81Q96NY9 551 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 SH3GL1Q99961 368 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 A0A096LPI6 279 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 A0A1W2PQ67 120 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 TRIM64CA6NLI5 447 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 SH3BGRLO75368 114 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 ERN1O75460 977 aaKnown RBP19.49■□□□□ 0.71
VPS53-201ENST00000291074 CREG1O75629 220 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 ARHGEF15O94989 841 aa19.49■□□□□ 0.71
VPS53-201ENST00000291074 HOXB9P17482 250 aaPredicted RBP19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms