RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 CHIT1Q13231 466 aa11.16□□□□□ -0.62
PTPN4-201ENST00000263708 WSCD2Q2TBF2 565 aa11.16□□□□□ -0.62
PTPN4-201ENST00000263708 MON1AQ86VX9 555 aa11.16□□□□□ -0.62
PTPN4-201ENST00000263708 SNX29P2Q8IUI4 249 aa11.16□□□□□ -0.62
PTPN4-201ENST00000263708 PLEKHA3Q9HB20 300 aa11.16□□□□□ -0.62
PTPN4-201ENST00000263708 ZNF225Q9UK10 706 aa11.16□□□□□ -0.62
PTPN4-201ENST00000263708 A0A1W2PQ67 120 aa11.16□□□□□ -0.62
PTPN4-201ENST00000263708 TIGD4Q8IY51 512 aa11.16□□□□□ -0.62
PTPN4-201ENST00000263708 MTERF1Q99551 399 aaKnown RBP11.16□□□□□ -0.62
PTPN4-201ENST00000263708 ASPNQ9BXN1 380 aa11.16□□□□□ -0.62
PTPN4-201ENST00000263708 MUC13Q9H3R2 512 aa11.16□□□□□ -0.62
PTPN4-201ENST00000263708 A0A0G2JN53 185 aa11.16□□□□□ -0.62
PTPN4-201ENST00000263708 TNFP01375 233 aa11.16□□□□□ -0.62
PTPN4-201ENST00000263708 CYP11A1P05108 521 aa11.16□□□□□ -0.62
PTPN4-201ENST00000263708 MPP1Q00013 466 aa11.16□□□□□ -0.62
PTPN4-201ENST00000263708 E2F1Q01094 437 aa11.16□□□□□ -0.62
PTPN4-201ENST00000263708 LRRC66Q68CR7 880 aa11.16□□□□□ -0.62
PTPN4-201ENST00000263708 ENPP7Q6UWV6 458 aa11.16□□□□□ -0.62
PTPN4-201ENST00000263708 TM9SF3Q9HD45 589 aa11.16□□□□□ -0.62
PTPN4-201ENST00000263708 J3QLW9 94 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 ZNF19P17023 458 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 PDK4Q16654 411 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 NODALQ96S42 347 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 EMC3Q9P0I2 261 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 RNF17Q9BXT8 1623 aaKnown RBP11.15□□□□□ -0.62
PTPN4-201ENST00000263708 SLC35F4A4IF30 521 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 CCRL2O00421 344 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 ERBB2P04626 1255 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 MAGEA6P43360 314 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 OR2B6P58173 313 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 C2orf27AQ580R0 203 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 PQLC1Q8N2U9 271 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 TMCO6Q96DC7 493 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 TMEM41AQ96HV5 264 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 HSFY1Q96LI6 401 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 ACO2Q99798 780 aaKnown RBP11.15□□□□□ -0.62
PTPN4-201ENST00000263708 ADAP2Q9NPF8 381 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 TBCCD1Q9NVR7 557 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 PCYOX1Q9UHG3 505 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 ZNF705EA8MWA4 302 aaPredicted RBP11.15□□□□□ -0.62
PTPN4-201ENST00000263708 CLCN4P51793 760 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 FIGNQ5HY92 759 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 UBE2Q1Q7Z7E8 422 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 LIN37Q96GY3 246 aaPredicted RBP11.15□□□□□ -0.62
PTPN4-201ENST00000263708 ABCA6Q8N139 1617 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 E9PCH4 1651 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 OR6C6A6NF89 314 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 M0R2N6 131 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 TOMM5Q8N4H5 51 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 UPF1Q92900 1129 aaKnown RBP eCLIP11.15□□□□□ -0.62
PTPN4-201ENST00000263708 TMEM203Q969S6 136 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 LAMP5Q9UJQ1 280 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 FAM149AA5PLN7 773 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 BLOC1S5-TXNDC5H3BN57 136 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 GPR153Q6NV75 609 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 GPR142Q7Z601 462 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 OR10Q1Q8NGQ4 319 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 STYXQ8WUJ0 223 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 MEAF6Q9HAF1 191 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 C14orf105Q9NVL8 296 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 TCRBV9S1A1TA0A576 114 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 HSBP1L1C9JCN9 74 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 CDC7O00311 574 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 RNF13O43567 381 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 ADAM15Q13444 863 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 POTEHQ6S545 545 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 NDRG1Q92597 394 aaKnown RBP11.15□□□□□ -0.62
PTPN4-201ENST00000263708 PSKH2Q96QS6 385 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 TMEM134Q9H6X4 195 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 ACP6Q9NPH0 428 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 FCF1Q9Y324 198 aaKnown RBP11.15□□□□□ -0.62
PTPN4-201ENST00000263708 BACE2Q9Y5Z0 518 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 SHOX2O60902 331 aaPredicted RBP11.15□□□□□ -0.62
PTPN4-201ENST00000263708 ERCC1P07992 297 aaPredicted RBP11.15□□□□□ -0.62
PTPN4-201ENST00000263708 CRYBB1P53674 252 aaPredicted RBP11.15□□□□□ -0.62
PTPN4-201ENST00000263708 HMBOX1Q6NT76 420 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 CMKLR1Q99788 373 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 FAM83DQ9H4H8 585 aa11.15□□□□□ -0.62
PTPN4-201ENST00000263708 PRR5-ARHGAP8B1AHC4 643 aa11.15□□□□□ -0.63
PTPN4-201ENST00000263708 PLD2O14939 933 aa11.15□□□□□ -0.63
PTPN4-201ENST00000263708 CNOT4O95628 575 aaKnown RBP11.15□□□□□ -0.63
PTPN4-201ENST00000263708 CBLP22681 906 aa11.15□□□□□ -0.63
PTPN4-201ENST00000263708 FXYD6P3P58550 94 aa11.15□□□□□ -0.63
PTPN4-201ENST00000263708 PPP4CP60510 307 aa11.15□□□□□ -0.63
PTPN4-201ENST00000263708 ARHGAP8P85298 464 aa11.15□□□□□ -0.63
PTPN4-201ENST00000263708 C9orf57Q5W0N0 161 aa11.15□□□□□ -0.63
PTPN4-201ENST00000263708 KCNJ9Q92806 393 aa11.15□□□□□ -0.63
PTPN4-201ENST00000263708 RADILQ96JH8 1075 aa11.15□□□□□ -0.63
PTPN4-201ENST00000263708 SPIN1Q9Y657 262 aaPredicted RBP11.15□□□□□ -0.63
PTPN4-201ENST00000263708 C5orf60A6NFR6 353 aa11.14□□□□□ -0.63
PTPN4-201ENST00000263708 PIM1P11309 404 aaPredicted RBP11.14□□□□□ -0.63
PTPN4-201ENST00000263708 LAG3P18627 525 aa11.14□□□□□ -0.63
PTPN4-201ENST00000263708 ITPK1Q13572 414 aa11.14□□□□□ -0.63
PTPN4-201ENST00000263708 CRB2Q5IJ48 1285 aa11.14□□□□□ -0.63
PTPN4-201ENST00000263708 ZDHHC21Q8IVQ6 265 aa11.14□□□□□ -0.63
PTPN4-201ENST00000263708 ZNF347Q96SE7 839 aa11.14□□□□□ -0.63
PTPN4-201ENST00000263708 WDR55Q9H6Y2 383 aaPredicted RBP11.14□□□□□ -0.63
PTPN4-201ENST00000263708 C1orf109Q9NX04 203 aa11.14□□□□□ -0.63
PTPN4-201ENST00000263708 ICKQ9UPZ9 632 aa11.14□□□□□ -0.63
PTPN4-201ENST00000263708 DPPA5A6NC42 116 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms