RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ERAP1Q9NZ08 941 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 PTTG2Q9NZH5 202 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 FLRT3Q9NZU0 649 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 SUCLA2Q9P2R7 463 aaPredicted RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 THEGQ9P2T0 379 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 ORC3Q9UBD5 711 aaPredicted RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 CRNNQ9UBG3 495 aaPredicted RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 CTSZQ9UBR2 303 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 TBC1D29Q9UFV1 150 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 AMACRQ9UHK6 382 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 DBNLQ9UJU6 430 aaKnown RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 CORO1CQ9ULV4 474 aaPredicted RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 SLC7A7Q9UM01 511 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 PLAGL1Q9UM63 463 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 MTMR6Q9Y217 621 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 RABGAP1Q9Y3P9 1069 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 NME7Q9Y5B8 376 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 ANGPTL3Q9Y5C1 460 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 PCDHGA5Q9Y5G8 931 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 SESN1Q9Y6P5 492 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 HCFC1P51610 2035 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 DHX57Q6P158 1386 aaKnown RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 GPR75-ASB3A0A0A6YYF3 556 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 IGHV3-20A0A0C4DH32 117 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 TRBV5-5A0A0J9YX44 114 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 A0A1W2PQ72 361 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 MED19A0JLT2 244 aaPredicted RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 ELOVL7A1L3X0 281 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 HYKKA2RU49 373 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 MTMR11A4FU01 709 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 ANKUB1A6NFN9 424 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 GLOD5A6NK44 160 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 MPTX1A8MV57 137 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 H0Y9J4 135 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 CCL24O00175 119 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 O00370 1275 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 ZNF195O14628 629 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 PTGESO14684 152 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 FPGTO14772 594 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 VILLO15195 856 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 ZBTB43O43298 467 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 ADAM20O43506 726 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 TLX2O43763 284 aaPredicted RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 SSX4O60224 188 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 DOK2O60496 412 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 SNAP91O60641 907 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 ZNF354AO60765 605 aaPredicted RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 PRKRAO75569 313 aaKnown RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 PRDM1O75626 825 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 DFFBO76075 338 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 DDHD2O94830 711 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 MBD4O95243 580 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 PIGNO95427 931 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 SEC24AO95486 1093 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 VTNP04004 478 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 IGKV3-11P04433 115 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 HMBSP08397 361 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 OR2T7P0C7T2 308 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 HSPA1AP0DMV8 641 aaKnown RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 HSPA1BP0DMV9 641 aaKnown RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 GP1BBP13224 206 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 CD59P13987 128 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 FOLR2P14207 255 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 TMEM11P17152 192 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 CYP11B2P19099 503 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 CA6P23280 308 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 IL4RP24394 825 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 EDNRAP25101 427 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 PTPN3P26045 913 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 CD27P26842 260 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 RBMS1P29558 406 aaKnown RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 SLC6A6P31641 620 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 GABRA5P31644 462 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 PTGER4P35408 488 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 HOXD13P35453 343 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 PPARGP37231 505 aaPredicted RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 MMP12P39900 470 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 ETV5P41161 510 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 PSMC4P43686 418 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 SLC15A1P46059 708 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 PRELPP51888 382 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 CDH11P55287 796 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 MAZP56270 477 aaKnown RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 SIRPAP78324 504 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 PRAMEP78395 509 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 IRX4P78413 519 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 TMF1P82094 1093 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 CDK3Q00526 305 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 NDPQ00604 133 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 SP3Q02447 781 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 CREB5Q02930 508 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 PRKCZQ05513 592 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 PAX8Q06710 450 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 ZNF415Q09FC8 603 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 GOLGA8DPQ0D2H9 430 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 LMOD3Q0VAK6 560 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 TAF10Q12962 218 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 IKQ13123 557 aaPredicted RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 SRSF9Q13242 221 aaKnown RBP eCLIP0.36□□□□□ -2.35
VPS35-212ENST00000640313 NFATC2Q13469 925 aa0.36□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms