RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 CFAP206Q8IYR0 622 aa3.38□□□□□ -1.87
CD44-239ENST00000639002 OR1L3Q8NH93 324 aa3.38□□□□□ -1.87
CD44-239ENST00000639002 RAD9AQ99638 391 aa3.38□□□□□ -1.87
CD44-239ENST00000639002 OLFM1Q99784 485 aa3.38□□□□□ -1.87
CD44-239ENST00000639002 SERINC1Q9NRX5 453 aa3.38□□□□□ -1.87
CD44-239ENST00000639002 KRT84Q9NSB2 600 aa3.38□□□□□ -1.87
CD44-239ENST00000639002 ZNF148Q9UQR1 794 aa3.38□□□□□ -1.87
CD44-239ENST00000639002 ANKUB1A6NFN9 424 aa3.37□□□□□ -1.87
CD44-239ENST00000639002 SEC24AO95486 1093 aa3.37□□□□□ -1.87
CD44-239ENST00000639002 C22orf31O95567 290 aa3.37□□□□□ -1.87
CD44-239ENST00000639002 VTNP04004 478 aa3.37□□□□□ -1.87
CD44-239ENST00000639002 PTGER3P43115 390 aa3.37□□□□□ -1.87
CD44-239ENST00000639002 LIMK2P53671 638 aa3.37□□□□□ -1.87
CD44-239ENST00000639002 PNLIPRP2P54317 469 aa3.37□□□□□ -1.87
CD44-239ENST00000639002 ZNF415Q09FC8 603 aa3.37□□□□□ -1.87
CD44-239ENST00000639002 AIMP2Q13155 320 aaKnown RBP3.37□□□□□ -1.87
CD44-239ENST00000639002 MTF1Q14872 753 aa3.37□□□□□ -1.87
CD44-239ENST00000639002 RAB41Q5JT25 222 aa3.37□□□□□ -1.87
CD44-239ENST00000639002 Q6ZR54 194 aa3.37□□□□□ -1.87
CD44-239ENST00000639002 EXOC8Q8IYI6 725 aa3.37□□□□□ -1.87
CD44-239ENST00000639002 C17orf47Q8NEP4 570 aa3.37□□□□□ -1.87
CD44-239ENST00000639002 RASL10AQ92737 203 aa3.37□□□□□ -1.87
CD44-239ENST00000639002 NECTIN4Q96NY8 510 aa3.37□□□□□ -1.87
CD44-239ENST00000639002 Q9N2K0 584 aa3.37□□□□□ -1.87
CD44-239ENST00000639002 EIF2B3Q9NR50 452 aaKnown RBP3.37□□□□□ -1.87
CD44-239ENST00000639002 MUTYHQ9UIF7 546 aa3.37□□□□□ -1.87
CD44-239ENST00000639002 ENO4A6NNW6 628 aa3.36□□□□□ -1.87
CD44-239ENST00000639002 A8MU10 97 aa3.36□□□□□ -1.87
CD44-239ENST00000639002 PTGES3LE9PB15 166 aa3.36□□□□□ -1.87
CD44-239ENST00000639002 GLRA3O75311 464 aa3.36□□□□□ -1.87
CD44-239ENST00000639002 IGHV3-13P01766 116 aa3.36□□□□□ -1.87
CD44-239ENST00000639002 PRKACGP22612 351 aa3.36□□□□□ -1.87
CD44-239ENST00000639002 MOGAT2Q3SYC2 334 aa3.36□□□□□ -1.87
CD44-239ENST00000639002 PDLIM3Q53GG5 364 aaPredicted RBP3.36□□□□□ -1.87
CD44-239ENST00000639002 SLC25A30Q5SVS4 291 aa3.36□□□□□ -1.87
CD44-239ENST00000639002 TMCO3Q6UWJ1 677 aa3.36□□□□□ -1.87
CD44-239ENST00000639002 FBXO39Q8N4B4 442 aa3.36□□□□□ -1.87
CD44-239ENST00000639002 OR2L2Q8NH16 312 aa3.36□□□□□ -1.87
CD44-239ENST00000639002 C11orf45Q8TAV5 145 aa3.36□□□□□ -1.87
CD44-239ENST00000639002 MIPOL1Q8TD10 442 aa3.36□□□□□ -1.87
CD44-239ENST00000639002 GATAD1Q8WUU5 269 aa3.36□□□□□ -1.87
CD44-239ENST00000639002 TBC1D17Q9HA65 648 aa3.36□□□□□ -1.87
CD44-239ENST00000639002 OR6C2Q9NZP2 312 aa3.36□□□□□ -1.87
CD44-239ENST00000639002 GRIP1Q9Y3R0 1128 aa3.36□□□□□ -1.87
CD44-239ENST00000639002 NME7Q9Y5B8 376 aa3.36□□□□□ -1.87
CD44-239ENST00000639002 CCDC189A1A4V9 331 aa3.35□□□□□ -1.87
CD44-239ENST00000639002 BCL2L11O43521 198 aa3.35□□□□□ -1.87
CD44-239ENST00000639002 PRAMEF11O60813 436 aa3.35□□□□□ -1.87
CD44-239ENST00000639002 AVILO75366 819 aa3.35□□□□□ -1.87
CD44-239ENST00000639002 CDK2AP2O75956 126 aa3.35□□□□□ -1.87
CD44-239ENST00000639002 TOMM70O94826 608 aa3.35□□□□□ -1.87
CD44-239ENST00000639002 OR2T7P0C7T2 308 aa3.35□□□□□ -1.87
CD44-239ENST00000639002 TRIM21P19474 475 aaKnown RBP3.35□□□□□ -1.87
CD44-239ENST00000639002 CYCSP99999 105 aaKnown RBP3.35□□□□□ -1.87
CD44-239ENST00000639002 KRTAP13-3Q3SY46 172 aa3.35□□□□□ -1.87
CD44-239ENST00000639002 CATSPERDQ86XM0 798 aa3.35□□□□□ -1.87
CD44-239ENST00000639002 AQP11Q8NBQ7 271 aa3.35□□□□□ -1.87
CD44-239ENST00000639002 DHX58Q96C10 678 aa3.35□□□□□ -1.87
CD44-239ENST00000639002 SAT2Q96F10 170 aaPredicted RBP3.35□□□□□ -1.87
CD44-239ENST00000639002 CDRT15Q96T59 188 aa3.35□□□□□ -1.87
CD44-239ENST00000639002 URM1Q9BTM9 101 aaKnown RBP3.35□□□□□ -1.87
CD44-239ENST00000639002 GNB4Q9HAV0 340 aa3.35□□□□□ -1.87
CD44-239ENST00000639002 ARHGEF38Q9NXL2 777 aa3.35□□□□□ -1.87
CD44-239ENST00000639002 SUCLA2Q9P2R7 463 aaPredicted RBP3.35□□□□□ -1.87
CD44-239ENST00000639002 TNNQ9UQP3 1299 aa3.35□□□□□ -1.87
CD44-239ENST00000639002 LAS1LQ9Y4W2 734 aaKnown RBP3.35□□□□□ -1.87
CD44-239ENST00000639002 PI4K2BG5E9Z4 385 aa3.34□□□□□ -1.87
CD44-239ENST00000639002 VILLO15195 856 aa3.34□□□□□ -1.87
CD44-239ENST00000639002 ADAMDEC1O15204 470 aa3.34□□□□□ -1.87
CD44-239ENST00000639002 SMIM18P0DKX4 95 aa3.34□□□□□ -1.87
CD44-239ENST00000639002 CDH3P22223 829 aa3.34□□□□□ -1.87
CD44-239ENST00000639002 JAK1P23458 1154 aa3.34□□□□□ -1.87
CD44-239ENST00000639002 PTPN3P26045 913 aa3.34□□□□□ -1.87
CD44-239ENST00000639002 SLC15A1P46059 708 aa3.34□□□□□ -1.87
CD44-239ENST00000639002 RPL21P46778 160 aaKnown RBP3.34□□□□□ -1.87
CD44-239ENST00000639002 ARSEP51690 589 aa3.34□□□□□ -1.87
CD44-239ENST00000639002 TMEM50BP56557 158 aa3.34□□□□□ -1.87
CD44-239ENST00000639002 KRTAP10-8P60410 259 aa3.34□□□□□ -1.87
CD44-239ENST00000639002 MAT1AQ00266 395 aaKnown RBP3.34□□□□□ -1.87
CD44-239ENST00000639002 LMOD3Q0VAK6 560 aa3.34□□□□□ -1.87
CD44-239ENST00000639002 CA9Q16790 459 aa3.34□□□□□ -1.87
CD44-239ENST00000639002 ELFN2Q5R3F8 820 aa3.34□□□□□ -1.87
CD44-239ENST00000639002 CCDC30Q5VVM6 783 aa3.34□□□□□ -1.87
CD44-239ENST00000639002 TMPRSS11BQ86T26 416 aa3.34□□□□□ -1.87
CD44-239ENST00000639002 C11orf53Q8IXP5 236 aa3.34□□□□□ -1.87
CD44-239ENST00000639002 CDK20Q8IZL9 346 aa3.34□□□□□ -1.87
CD44-239ENST00000639002 APOBEC4Q8WW27 367 aaKnown RBP3.34□□□□□ -1.87
CD44-239ENST00000639002 PAFAH2Q99487 392 aa3.34□□□□□ -1.87
CD44-239ENST00000639002 SMARCAD1Q9H4L7 1026 aa3.34□□□□□ -1.87
CD44-239ENST00000639002 PANK3Q9H999 370 aa3.34□□□□□ -1.87
CD44-239ENST00000639002 SPHK1Q9NYA1 384 aa3.34□□□□□ -1.87
CD44-239ENST00000639002 WBP11Q9Y2W2 641 aaKnown RBP3.34□□□□□ -1.87
CD44-239ENST00000639002 TRIM17Q9Y577 477 aa3.34□□□□□ -1.87
CD44-239ENST00000639002 ZNF644Q9H582 1327 aaPredicted RBP3.34□□□□□ -1.87
CD44-239ENST00000639002 HCFC1P51610 2035 aa3.34□□□□□ -1.88
CD44-239ENST00000639002 SHISA7A6NL88 538 aa3.33□□□□□ -1.88
CD44-239ENST00000639002 C2orf81A6NN90 581 aa3.33□□□□□ -1.88
CD44-239ENST00000639002 AGAP14A8MT82 685 aa3.33□□□□□ -1.88
CD44-239ENST00000639002 EPB41L2O43491 1005 aaKnown RBP3.33□□□□□ -1.88
CD44-239ENST00000639002 VPREB1P12018 145 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms