RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 KLHL35Q6PF15 583 aa19.1■□□□□ 0.65
UPF3A-211ENST00000618700 MBOAT1Q6ZNC8 495 aa19.1■□□□□ 0.65
UPF3A-211ENST00000618700 ERMP1Q7Z2K6 904 aa19.1■□□□□ 0.65
UPF3A-211ENST00000618700 ADGRF3Q8IZF5 1079 aa19.1■□□□□ 0.65
UPF3A-211ENST00000618700 LINC01555Q8NAE3 123 aa19.1■□□□□ 0.65
UPF3A-211ENST00000618700 OR2L8Q8NGY9 312 aa19.1■□□□□ 0.65
UPF3A-211ENST00000618700 RHEBL1Q8TAI7 183 aa19.1■□□□□ 0.65
UPF3A-211ENST00000618700 HMGCLL1Q8TB92 370 aa19.1■□□□□ 0.65
UPF3A-211ENST00000618700 ATOH8Q96SQ7 321 aa19.1■□□□□ 0.65
UPF3A-211ENST00000618700 RAB33BQ9H082 229 aa19.1■□□□□ 0.65
UPF3A-211ENST00000618700 ALG9Q9H6U8 611 aa19.1■□□□□ 0.65
UPF3A-211ENST00000618700 ZNF358Q9NW07 568 aa19.1■□□□□ 0.65
UPF3A-211ENST00000618700 DCHS1Q96JQ0 3298 aa19.1■□□□□ 0.65
UPF3A-211ENST00000618700 MN1Q10571 1320 aaPredicted RBP19.09■□□□□ 0.65
UPF3A-211ENST00000618700 D6RAR5 112 aa19.09■□□□□ 0.65
UPF3A-211ENST00000618700 GOLGA8RI6L899 631 aa19.09■□□□□ 0.65
UPF3A-211ENST00000618700 BTN3A3O00478 584 aa19.09■□□□□ 0.65
UPF3A-211ENST00000618700 KERAO60938 352 aa19.09■□□□□ 0.65
UPF3A-211ENST00000618700 AMD1P17707 334 aa19.09■□□□□ 0.65
UPF3A-211ENST00000618700 IMPA1P29218 277 aa19.09■□□□□ 0.65
UPF3A-211ENST00000618700 INSM1Q01101 510 aaPredicted RBP19.09■□□□□ 0.65
UPF3A-211ENST00000618700 TGFBIQ15582 683 aa19.09■□□□□ 0.65
UPF3A-211ENST00000618700 AMZ1Q400G9 498 aa19.09■□□□□ 0.65
UPF3A-211ENST00000618700 CCDC157Q569K6 752 aa19.09■□□□□ 0.65
UPF3A-211ENST00000618700 TNFAIP8L3Q5GJ75 292 aa19.09■□□□□ 0.65
UPF3A-211ENST00000618700 TECRLQ5HYJ1 363 aa19.09■□□□□ 0.65
UPF3A-211ENST00000618700 ANKS6Q68DC2 871 aa19.09■□□□□ 0.65
UPF3A-211ENST00000618700 KLC3Q6P597 504 aa19.09■□□□□ 0.65
UPF3A-211ENST00000618700 WDR74Q6RFH5 385 aaPredicted RBP19.09■□□□□ 0.65
UPF3A-211ENST00000618700 HDXQ7Z353 690 aa19.09■□□□□ 0.65
UPF3A-211ENST00000618700 TMPRSS9Q7Z410 1059 aa19.09■□□□□ 0.65
UPF3A-211ENST00000618700 OOSP2Q86WS3 158 aa19.09■□□□□ 0.65
UPF3A-211ENST00000618700 RAB42Q8N4Z0 105 aa19.09■□□□□ 0.65
UPF3A-211ENST00000618700 STAG3L4Q8TBR4 150 aa19.09■□□□□ 0.65
UPF3A-211ENST00000618700 ZNF480Q8WV37 535 aa19.09■□□□□ 0.65
UPF3A-211ENST00000618700 PGM2Q96G03 612 aa19.09■□□□□ 0.65
UPF3A-211ENST00000618700 AHCYL2Q96HN2 611 aaKnown RBP19.09■□□□□ 0.65
UPF3A-211ENST00000618700 CCDC138Q96M89 665 aa19.09■□□□□ 0.65
UPF3A-211ENST00000618700 GFM1Q96RP9 751 aaKnown RBP19.09■□□□□ 0.65
UPF3A-211ENST00000618700 NUDT22Q9BRQ3 303 aa19.09■□□□□ 0.65
UPF3A-211ENST00000618700 TRIM54Q9BYV2 358 aa19.09■□□□□ 0.65
UPF3A-211ENST00000618700 UTP6Q9NYH9 597 aaKnown RBP19.09■□□□□ 0.65
UPF3A-211ENST00000618700 STOX2Q9P2F5 926 aaPredicted RBP19.09■□□□□ 0.65
UPF3A-211ENST00000618700 EPHA6Q9UF33 1036 aa19.09■□□□□ 0.65
UPF3A-211ENST00000618700 RGS16O15492 202 aaPredicted RBP19.08■□□□□ 0.64
UPF3A-211ENST00000618700 CPNE6O95741 557 aa19.08■□□□□ 0.64
UPF3A-211ENST00000618700 SYF2O95926 243 aaKnown RBP19.08■□□□□ 0.64
UPF3A-211ENST00000618700 GSTA1P08263 222 aa19.08■□□□□ 0.64
UPF3A-211ENST00000618700 CHRM5P08912 532 aaPredicted RBP19.08■□□□□ 0.64
UPF3A-211ENST00000618700 HIST1H2AGP0C0S8 130 aaPredicted RBP19.08■□□□□ 0.64
UPF3A-211ENST00000618700 HIST1H2ADP20671 130 aa19.08■□□□□ 0.64
UPF3A-211ENST00000618700 PEBP1P30086 187 aaKnown RBP19.08■□□□□ 0.64
UPF3A-211ENST00000618700 HSD17B2P37059 387 aa19.08■□□□□ 0.64
UPF3A-211ENST00000618700 GLRBP48167 497 aa19.08■□□□□ 0.64
UPF3A-211ENST00000618700 KCNC1P48547 511 aa19.08■□□□□ 0.64
UPF3A-211ENST00000618700 SLC18A2Q05940 514 aa19.08■□□□□ 0.64
UPF3A-211ENST00000618700 CDCP2Q5VXM1 449 aa19.08■□□□□ 0.64
UPF3A-211ENST00000618700 DHRS13Q6UX07 377 aa19.08■□□□□ 0.64
UPF3A-211ENST00000618700 FRA10AC1Q70Z53 315 aa19.08■□□□□ 0.64
UPF3A-211ENST00000618700 GPSM1Q86YR5 675 aa19.08■□□□□ 0.64
UPF3A-211ENST00000618700 NCSTNQ92542 709 aa19.08■□□□□ 0.64
UPF3A-211ENST00000618700 FBXL8Q96CD0 374 aa19.08■□□□□ 0.64
UPF3A-211ENST00000618700 HIST1H2AHQ96KK5 128 aa19.08■□□□□ 0.64
UPF3A-211ENST00000618700 HIST1H2AJQ99878 128 aa19.08■□□□□ 0.64
UPF3A-211ENST00000618700 DPYSL5Q9BPU6 564 aa19.08■□□□□ 0.64
UPF3A-211ENST00000618700 H2AFJQ9BTM1 129 aa19.08■□□□□ 0.64
UPF3A-211ENST00000618700 VIPAS39Q9H9C1 493 aa19.08■□□□□ 0.64
UPF3A-211ENST00000618700 HRASLS2Q9NWW9 162 aa19.08■□□□□ 0.64
UPF3A-211ENST00000618700 MKS1Q9NXB0 559 aa19.08■□□□□ 0.64
UPF3A-211ENST00000618700 ARL15Q9NXU5 204 aa19.08■□□□□ 0.64
UPF3A-211ENST00000618700 LNPEPQ9UIQ6 1025 aa19.08■□□□□ 0.64
UPF3A-211ENST00000618700 ATXN7L1Q9ULK2 861 aaPredicted RBP19.08■□□□□ 0.64
UPF3A-211ENST00000618700 RNF112Q9ULX5 631 aa19.08■□□□□ 0.64
UPF3A-211ENST00000618700 PABPN1LA6NDY0 278 aaKnown RBP19.07■□□□□ 0.64
UPF3A-211ENST00000618700 ZNF839A8K0R7 811 aa19.07■□□□□ 0.64
UPF3A-211ENST00000618700 AGPSO00116 658 aa19.07■□□□□ 0.64
UPF3A-211ENST00000618700 MATN2O00339 956 aa19.07■□□□□ 0.64
UPF3A-211ENST00000618700 PRICKLE3O43900 615 aaPredicted RBP19.07■□□□□ 0.64
UPF3A-211ENST00000618700 C9P02748 559 aa19.07■□□□□ 0.64
UPF3A-211ENST00000618700 KRT4P19013 534 aa19.07■□□□□ 0.64
UPF3A-211ENST00000618700 KPNA2P52292 529 aaKnown RBP19.07■□□□□ 0.64
UPF3A-211ENST00000618700 PDX1P52945 283 aa19.07■□□□□ 0.64
UPF3A-211ENST00000618700 PNLIPRP1P54315 467 aa19.07■□□□□ 0.64
UPF3A-211ENST00000618700 GFERP55789 205 aa19.07■□□□□ 0.64
UPF3A-211ENST00000618700 SPIDRQ14159 915 aa19.07■□□□□ 0.64
UPF3A-211ENST00000618700 FASTKQ14296 549 aaKnown RBP19.07■□□□□ 0.64
UPF3A-211ENST00000618700 CDKL4Q5MAI5 379 aa19.07■□□□□ 0.64
UPF3A-211ENST00000618700 USP53Q70EK8 1073 aa19.07■□□□□ 0.64
UPF3A-211ENST00000618700 SRRM1Q8IYB3 904 aaKnown RBP19.07■□□□□ 0.64
UPF3A-211ENST00000618700 LRRC56Q8IYG6 542 aaPredicted RBP19.07■□□□□ 0.64
UPF3A-211ENST00000618700 C4orf33Q8N1A6 199 aa19.07■□□□□ 0.64
UPF3A-211ENST00000618700 LMNTD1Q8N9Z9 388 aa19.07■□□□□ 0.64
UPF3A-211ENST00000618700 FLVCR1-AS1Q8TAF5 88 aa19.07■□□□□ 0.64
UPF3A-211ENST00000618700 TSNARE1Q96NA8 513 aa19.07■□□□□ 0.64
UPF3A-211ENST00000618700 KCNK17Q96T54 332 aa19.07■□□□□ 0.64
UPF3A-211ENST00000618700 ABCG4Q9H172 646 aa19.07■□□□□ 0.64
UPF3A-211ENST00000618700 SYNDIG1Q9H7V2 258 aa19.07■□□□□ 0.64
UPF3A-211ENST00000618700 SPHK1Q9NYA1 384 aa19.07■□□□□ 0.64
UPF3A-211ENST00000618700 ACTR10Q9NZ32 417 aa19.07■□□□□ 0.64
UPF3A-211ENST00000618700 TMEM9Q9P0T7 183 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms