RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 MRPS15P82914 257 aaKnown RBP17.93■□□□□ 0.46
UPF1-210ENST00000600689 MBOAT1Q6ZNC8 495 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 KLHDC9Q8NEP7 349 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 MDGA1Q8NFP4 955 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 Q96MT0 163 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 CHCHD6Q9BRQ6 235 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 CEP44Q9C0F1 390 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 HOXD1Q9GZZ0 328 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 NECTIN3Q9NQS3 549 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 USE1Q9NZ43 259 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 AFF4Q9UHB7 1163 aaKnown RBP17.93■□□□□ 0.46
UPF1-210ENST00000600689 LOC285095A0A1B0GVY8 99 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 AP3D1O14617 1153 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 KRT8P05787 483 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 SERPINF2P08697 491 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 CREMQ03060 361 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 GTF2H2Q13888 395 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 ZNF404Q494X3 552 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 GTF2H2CQ6P1K8 395 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 EFL1Q7Z2Z2 1120 aaKnown RBP17.93■□□□□ 0.46
UPF1-210ENST00000600689 TPD52L3Q96J77 140 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 CSNK1G1Q9HCP0 422 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 FBXO8Q9NRD0 319 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 OPTCQ9UBM4 332 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 SNX6Q9UNH7 406 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 A0A1W2PQ67 120 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 SH3BGRLO75368 114 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 ODC1P11926 461 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 CASP9P55211 416 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 PRKCZQ05513 592 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 CPSF6Q16630 551 aaKnown RBP eCLIP17.92■□□□□ 0.46
UPF1-210ENST00000600689 ARTNQ5T4W7 220 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 RNF38Q9H0F5 515 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 QPCTLQ9NXS2 382 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 SAMHD1Q9Y3Z3 626 aaKnown RBP17.92■□□□□ 0.46
UPF1-210ENST00000600689 TAF4O00268 1085 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 OR7A17O14581 309 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 B4GALT3O60512 393 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 SLC14A1Q13336 389 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 SPATS1Q496A3 300 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 SUSD1Q6UWL2 747 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 HORMAD1Q86X24 394 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 NLGN4XQ8N0W4 816 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 KCNC2Q96PR1 638 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 KCNS3Q9BQ31 491 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 DPH2Q9BQC3 489 aaPredicted RBP17.92■□□□□ 0.46
UPF1-210ENST00000600689 GORASP2Q9H8Y8 452 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 A8MX80 341 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 ANKRD28O15084 1053 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 IDH3BO43837 385 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 NUAK1O60285 661 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 ADAMTS4O75173 837 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 TSPAN12O95859 305 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 FGF1P05230 155 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 ELNP15502 786 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 HOXC13P31276 330 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 CASP3P42574 277 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 CDKN2CP42773 168 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 SUOXP51687 545 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 TPRG1LQ5T0D9 272 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 ZCCHC8Q6NZY4 707 aaKnown RBP17.92■□□□□ 0.46
UPF1-210ENST00000600689 NKAPQ8N5F7 415 aaKnown RBP17.92■□□□□ 0.46
UPF1-210ENST00000600689 DCAF13Q9NV06 445 aaKnown RBP17.92■□□□□ 0.46
UPF1-210ENST00000600689 ERVK13-1Q9NX77 482 aa17.92■□□□□ 0.46
UPF1-210ENST00000600689 AGO1Q9UL18 857 aaKnown RBP17.92■□□□□ 0.46
UPF1-210ENST00000600689 LAMA3Q16787 3333 aa17.91■□□□□ 0.46
UPF1-210ENST00000600689 DAB2P98082 770 aa17.91■□□□□ 0.46
UPF1-210ENST00000600689 GRIK2Q13002 908 aa17.91■□□□□ 0.46
UPF1-210ENST00000600689 AFMIDQ63HM1 303 aa17.91■□□□□ 0.46
UPF1-210ENST00000600689 FAM171BQ6P995 826 aa17.91■□□□□ 0.46
UPF1-210ENST00000600689 DOK6Q6PKX4 331 aa17.91■□□□□ 0.46
UPF1-210ENST00000600689 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.91■□□□□ 0.46
UPF1-210ENST00000600689 MRPL10Q7Z7H8 261 aaKnown RBP17.91■□□□□ 0.46
UPF1-210ENST00000600689 ZNF598Q86UK7 904 aaKnown RBP17.91■□□□□ 0.46
UPF1-210ENST00000600689 P3H2Q8IVL5 708 aa17.91■□□□□ 0.46
UPF1-210ENST00000600689 METTL4Q8N3J2 472 aa17.91■□□□□ 0.46
UPF1-210ENST00000600689 CLDN19Q8N6F1 224 aa17.91■□□□□ 0.46
UPF1-210ENST00000600689 TTC9BQ8N6N2 239 aa17.91■□□□□ 0.46
UPF1-210ENST00000600689 MINDY2Q8NBR6 621 aa17.91■□□□□ 0.46
UPF1-210ENST00000600689 CD200R1Q8TD46 325 aa17.91■□□□□ 0.46
UPF1-210ENST00000600689 REXO5Q96IC2 774 aaKnown RBP17.91■□□□□ 0.46
UPF1-210ENST00000600689 OR51E2Q9H255 320 aa17.91■□□□□ 0.46
UPF1-210ENST00000600689 KRT84Q9NSB2 600 aa17.91■□□□□ 0.46
UPF1-210ENST00000600689 TAS2R16Q9NYV7 291 aa17.91■□□□□ 0.46
UPF1-210ENST00000600689 ZNF490Q9ULM2 529 aaPredicted RBP17.91■□□□□ 0.46
UPF1-210ENST00000600689 TDRD15B5MCY1 1934 aaKnown RBP17.91■□□□□ 0.46
UPF1-210ENST00000600689 SLC12A8A0AV02 714 aa17.91■□□□□ 0.46
UPF1-210ENST00000600689 ANKRD34BA5PLL1 514 aa17.91■□□□□ 0.46
UPF1-210ENST00000600689 TFECO14948 347 aaPredicted RBP17.91■□□□□ 0.46
UPF1-210ENST00000600689 COL6A1P12109 1028 aa17.91■□□□□ 0.46
UPF1-210ENST00000600689 AZGP1P25311 298 aaKnown RBP17.91■□□□□ 0.46
UPF1-210ENST00000600689 RPL9P32969 192 aaKnown RBP17.91■□□□□ 0.46
UPF1-210ENST00000600689 IDH2P48735 452 aaKnown RBP17.91■□□□□ 0.46
UPF1-210ENST00000600689 ARHGDIAP52565 204 aa17.91■□□□□ 0.46
UPF1-210ENST00000600689 CRISP3P54108 245 aa17.91■□□□□ 0.46
UPF1-210ENST00000600689 ACOX1Q15067 660 aa17.91■□□□□ 0.46
UPF1-210ENST00000600689 CTSL3PQ5NE16 218 aa17.91■□□□□ 0.46
UPF1-210ENST00000600689 CPZQ66K79 652 aa17.91■□□□□ 0.46
UPF1-210ENST00000600689 HIPK1Q86Z02 1210 aa17.91■□□□□ 0.46
UPF1-210ENST00000600689 UMODL1-AS1Q8N2C9 162 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms