RNA–Protein interactions for RNA: ENST00000582453.5

MSI2-215, Transcript of musashi RNA binding protein 2, human

TSL 3

Gene MSI2, Length 496 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSI2-215	ENST00000582453	TUBA1B	P68363	451 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	PRAME	P78395	509 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	ECT2L	Q008S8	904 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	BNC1	Q01954	994 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	ROR1	Q01973	937 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	LAMTOR4	Q0VGL1	99 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	GRIK3	Q13003	919 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	FRG1	Q14331	258 aa	Known RBP	3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	PCLAF	Q15004	111 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	KARS	Q15046	597 aa	Known RBP	3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	HSPB2	Q16082	182 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	ESCO2	Q56NI9	601 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	SPECC1	Q5M775	1068 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	C1QTNF12	Q5T7M4	302 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	GARNL3	Q5VVW2	1013 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	KIAA0930	Q6ICG6	404 aa	Predicted RBP	3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	CES5A	Q6NT32	575 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	GLDN	Q6ZMI3	551 aa	Predicted RBP	3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	CFAP77	Q6ZQR2	320 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	DENND5B	Q6ZUT9	1274 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	GPAT4	Q86UL3	456 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	LINC00346	Q8IVM7	164 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	DHX40	Q8IX18	779 aa	Known RBP	3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	KIAA2013	Q8IYS2	634 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	DCP1B	Q8IZD4	617 aa	Known RBP	3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	DAW1	Q8N136	415 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	C17orf53	Q8N3J3	647 aa	Predicted RBP	3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	IL17RC	Q8NAC3	791 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	SPATA20	Q8TB22	786 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	PHOSPHO2	Q8TCD6	241 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	LRRC15	Q8TF66	581 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	TMED6	Q8WW62	240 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	DNAJB3	Q8WWF6	145 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	PRPF31	Q8WWY3	499 aa	Known RBP	3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	POMGNT1	Q8WZA1	660 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	SEPT8	Q92599	483 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	SMARCE1	Q969G3	411 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	DNAJC19	Q96DA6	116 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	ZC3HAV1L	Q96H79	300 aa	Known RBP	3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	EPSTI1	Q96J88	318 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	CCDC43	Q96MW1	224 aa	Known RBP	3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	ZMAT2	Q96NC0	199 aa	Known RBP	3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	GCOM2	Q9BZD3	368 aa	Predicted RBP	3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	TRIM9	Q9C026	710 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	C2orf40	Q9H1Z8	148 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	MTIF3	Q9H2K0	278 aa	Known RBP	3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	FZD8	Q9H461	694 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	PARVG	Q9HBI0	331 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	CYSLTR2	Q9NS75	346 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	LARS	Q9P2J5	1176 aa	Known RBP	3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	CHORDC1	Q9UHD1	332 aa	Predicted RBP	3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	HOOK1	Q9UJC3	728 aa	Known RBP	3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	HAO1	Q9UJM8	370 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	CARD8	Q9Y2G2	431 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	PCDHGB1	Q9Y5G3	927 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	A3GALT2	U3KPV4	340 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	COL4A6	Q14031	1691 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	UBE4B	O95155	1302 aa		3.13	□□□□□ -1.91
MSI2-215	ENST00000582453	SCN10A	Q9Y5Y9	1956 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	PLXNA1	Q9UIW2	1896 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453		A0A1W2PR77	199 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	GOLGA6L4	A6NEF3	574 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	GLOD5	A6NK44	160 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	PRR23D1	E9PI22	279 aa	Predicted RBP	3.12	□□□□□ -1.91
MSI2-215	ENST00000582453		H7C0S8	307 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453		J3KR12	359 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	EIF3D	O15371	548 aa	Known RBP eCLIP	3.12	□□□□□ -1.91	9e-11	■■■■□ 20.5
MSI2-215	ENST00000582453	POLR2D	O15514	142 aa	Known RBP	3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	PAPSS1	O43252	624 aa	Predicted RBP	3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	HCRTR2	O43614	444 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	KLK8	O60259	260 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	TBCA	O75347	108 aa	Known RBP	3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	RPS6KA5	O75582	802 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	GAGE7	O76087	117 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	IPO7	O95373	1038 aa	Known RBP	3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	ZBTB11	O95625	1053 aa	Predicted RBP	3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	PPP1R3D	O95685	299 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	MBD3	O95983	291 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	CHRNA1	P02708	482 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	RB1	P06400	928 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	GAGE12F	P0CL80	117 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	GAGE12G	P0CL81	117 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	GAGE12I	P0CL82	117 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	PRR23D2	P0DMB1	279 aa	Predicted RBP	3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	IRF1	P10914	325 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	ACTN1	P12814	892 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	CD58	P19256	250 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	GCH1	P30793	250 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	PPP1R2	P41236	205 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	SYK	P43405	635 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	PDLIM4	P50479	330 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	CLCN3	P51790	818 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	NDUFA8	P51970	172 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	GAS1	P54826	345 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	F2RL1	P55085	397 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	NLRP11	P59045	1033 aa	Known RBP	3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	GTF2B	Q00403	316 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	MBTD1	Q05BQ5	628 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	ENPEP	Q07075	957 aa		3.12	□□□□□ -1.91
MSI2-215	ENST00000582453	NCBP1	Q09161	790 aa	Known RBP	3.12	□□□□□ -1.91

Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms