RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 SH2B2O14492 632 aaPredicted RBP4.72□□□□□ -1.65
NUP88-213ENST00000576862 ZNF197O14709 1029 aa4.72□□□□□ -1.65
NUP88-213ENST00000576862 ATP6V0E1O15342 81 aa4.72□□□□□ -1.65
NUP88-213ENST00000576862 NR2F1P10589 423 aa4.72□□□□□ -1.65
NUP88-213ENST00000576862 EFNA1P20827 205 aaPredicted RBP4.72□□□□□ -1.65
NUP88-213ENST00000576862 CA4P22748 312 aa4.72□□□□□ -1.65
NUP88-213ENST00000576862 WNT5AP41221 380 aa4.72□□□□□ -1.65
NUP88-213ENST00000576862 IFI35P80217 286 aaPredicted RBP4.72□□□□□ -1.65
NUP88-213ENST00000576862 CDC37Q16543 378 aaPredicted RBP4.72□□□□□ -1.65
NUP88-213ENST00000576862 CBWD6Q4V339 395 aa4.72□□□□□ -1.65
NUP88-213ENST00000576862 CBWD3Q5JTY5 395 aa4.72□□□□□ -1.65
NUP88-213ENST00000576862 GARNL3Q5VVW2 1013 aa4.72□□□□□ -1.65
NUP88-213ENST00000576862 SYT2Q8N9I0 419 aaPredicted RBP4.72□□□□□ -1.65
NUP88-213ENST00000576862 IRGQQ8WZA9 623 aa4.72□□□□□ -1.65
NUP88-213ENST00000576862 KLHL4Q9C0H6 718 aa4.72□□□□□ -1.65
NUP88-213ENST00000576862 SDR39U1Q9NRG7 319 aaPredicted RBP4.72□□□□□ -1.65
NUP88-213ENST00000576862 B3GAT1Q9P2W7 334 aa4.72□□□□□ -1.65
NUP88-213ENST00000576862 RIPK3Q9Y572 518 aa4.72□□□□□ -1.65
NUP88-213ENST00000576862 MAGED1Q9Y5V3 778 aaPredicted RBP4.72□□□□□ -1.65
NUP88-213ENST00000576862 NUP155O75694 1391 aa4.72□□□□□ -1.65
NUP88-213ENST00000576862 TONSLQ96HA7 1378 aa4.72□□□□□ -1.65
NUP88-213ENST00000576862 GCC2Q8IWJ2 1684 aa4.72□□□□□ -1.65
NUP88-213ENST00000576862 ABCC1P33527 1531 aa4.72□□□□□ -1.65
NUP88-213ENST00000576862 FANCAO15360 1455 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 LOC101059948A0A1B0GTJ6 334 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 A0A1W2PN81 502 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 DANCRP0C864 163 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 FAM200BP0CF97 657 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 ZNF26P17031 533 aaPredicted RBP4.71□□□□□ -1.66
NUP88-213ENST00000576862 SLC6A6P31641 620 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 CHRNA7P36544 502 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 NNMTP40261 264 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 HNRNPKP61978 463 aaKnown RBP eCLIP4.71□□□□□ -1.66
NUP88-213ENST00000576862 GPR17Q13304 367 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 KRTAP27-1Q3LI81 207 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 GTDC1Q4AE62 458 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 FFAR4Q5NUL3 377 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 ENOSF1Q7L5Y1 443 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 SLC16A9Q7RTY1 509 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 KRTAP7-1Q8IUC3 87 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 CREBRFQ8IUR6 639 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 CCDC89Q8N998 374 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 ADAD2Q8NCV1 583 aaKnown RBP4.71□□□□□ -1.66
NUP88-213ENST00000576862 EXD1Q8NHP7 514 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 CFAP61Q8NHU2 1237 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 PTERQ96BW5 349 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 SPACA9Q96E40 222 aaPredicted RBP4.71□□□□□ -1.66
NUP88-213ENST00000576862 PRAC1Q96KF2 57 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 FNBP1Q96RU3 617 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 S1PR5Q9H228 398 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 GOLPH3LQ9H4A5 285 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 Q9N2K0 584 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 INTS9Q9NV88 658 aaKnown RBP4.71□□□□□ -1.66
NUP88-213ENST00000576862 CWC25Q9NXE8 425 aaPredicted RBP4.71□□□□□ -1.66
NUP88-213ENST00000576862 TMEM181Q9P2C4 612 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 LRWD1Q9UFC0 647 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 PYGO1Q9Y3Y4 419 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 CDC42BPAQ5VT25 1732 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 SCAPERQ9BY12 1400 aa4.71□□□□□ -1.66
NUP88-213ENST00000576862 SPAG9O60271 1321 aaKnown RBP4.71□□□□□ -1.66
NUP88-213ENST00000576862 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.7□□□□□ -1.66
NUP88-213ENST00000576862 TSPAN1O60635 241 aa4.7□□□□□ -1.66
NUP88-213ENST00000576862 RNASEH1O60930 286 aaKnown RBP4.7□□□□□ -1.66
NUP88-213ENST00000576862 PRKRAO75569 313 aaKnown RBP4.7□□□□□ -1.66
NUP88-213ENST00000576862 STARD3NLO95772 234 aa4.7□□□□□ -1.66
NUP88-213ENST00000576862 EML2O95834 649 aa4.7□□□□□ -1.66
NUP88-213ENST00000576862 IGLV1-44P01699 117 aa4.7□□□□□ -1.66
NUP88-213ENST00000576862 BECN1Q14457 450 aa4.7□□□□□ -1.66
NUP88-213ENST00000576862 FCN2Q15485 313 aa4.7□□□□□ -1.66
NUP88-213ENST00000576862 SNAPC1Q16533 368 aa4.7□□□□□ -1.66
NUP88-213ENST00000576862 PHLDA2Q53GA4 152 aa4.7□□□□□ -1.66
NUP88-213ENST00000576862 BMP2KLQ5H9B9 411 aa4.7□□□□□ -1.66
NUP88-213ENST00000576862 CYP4A22Q5TCH4 519 aa4.7□□□□□ -1.66
NUP88-213ENST00000576862 TMEM139Q8IV31 216 aa4.7□□□□□ -1.66
NUP88-213ENST00000576862 NPEPL1Q8NDH3 523 aa4.7□□□□□ -1.66
NUP88-213ENST00000576862 GIMAP5Q96F15 307 aa4.7□□□□□ -1.66
NUP88-213ENST00000576862 DGAT2Q96PD7 388 aa4.7□□□□□ -1.66
NUP88-213ENST00000576862 SERINC1Q9NRX5 453 aa4.7□□□□□ -1.66
NUP88-213ENST00000576862 FLRT3Q9NZU0 649 aa4.7□□□□□ -1.66
NUP88-213ENST00000576862 ZDHHC2Q9UIJ5 367 aa4.7□□□□□ -1.66
NUP88-213ENST00000576862 CD109Q6YHK3 1445 aa4.7□□□□□ -1.66
NUP88-213ENST00000576862 PCDH11YQ9BZA8 1340 aa4.7□□□□□ -1.66
NUP88-213ENST00000576862 MAST1Q9Y2H9 1570 aa4.7□□□□□ -1.66
NUP88-213ENST00000576862 ADGRL1O94910 1474 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 ABCA9Q8IUA7 1624 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 KDM5DQ9BY66 1539 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 PSMD14O00487 310 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 TRMUO75648 421 aaKnown RBP4.69□□□□□ -1.66
NUP88-213ENST00000576862 EDN1P05305 212 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 NKX2-1P43699 371 aaPredicted RBP4.69□□□□□ -1.66
NUP88-213ENST00000576862 SLC9A3P48764 834 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 PDX1P52945 283 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 PMP22Q01453 160 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 PRKCZQ05513 592 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 ITGA9Q13797 1035 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 ITPRIPL2Q3MIP1 535 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 SPDYCQ5MJ68 293 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 ZNF790Q6PG37 636 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 TMPRSS11BQ86T26 416 aa4.69□□□□□ -1.66
NUP88-213ENST00000576862 PIGZQ86VD9 579 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms