RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 SERPINB12Q96P63 405 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 GBP5Q96PP8 586 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 OSBPL9Q96SU4 736 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 DPH2Q9BQC3 489 aaPredicted RBP14.32□□□□□ -0.12
CLN3-213ENST00000565047 TRIM4Q9C037 500 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 EPN3Q9H201 632 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 GRPEL1Q9HAV7 217 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 RUVBL2Q9Y230 463 aaKnown RBP14.32□□□□□ -0.12
CLN3-213ENST00000565047 KLHL20Q9Y2M5 609 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 KLK4Q9Y5K2 254 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 MYO18BQ8IUG5 2567 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 FER1L5A0AVI2 2057 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 SEC16AO15027 2179 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 MAGEB16A2A368 324 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 KRT87PA6NCN2 255 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 ISM1B1AKI9 464 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 CES2O00748 559 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 KPNA5O15131 536 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 NIPSNAP2O75323 286 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 CEACAM4O75871 244 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 ESR1P03372 595 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 CBSLP0DN79 551 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 ITGAXP20702 1163 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 OGNP20774 298 aaKnown RBP14.31□□□□□ -0.12
CLN3-213ENST00000565047 MAGP20916 626 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 FMO4P31512 558 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 CBSP35520 551 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 TERF1P54274 439 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 EIF3BP55884 814 aaKnown RBP14.31□□□□□ -0.12
CLN3-213ENST00000565047 TLE1Q04724 770 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 NCF4Q15080 339 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 LACTB2Q53H82 288 aaPredicted RBP14.31□□□□□ -0.12
CLN3-213ENST00000565047 PAPD7Q5XG87 772 aaKnown RBP14.31□□□□□ -0.12
CLN3-213ENST00000565047 NEPROQ6NW34 567 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 OTOAQ7RTW8 1153 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 SPNS2Q8IVW8 549 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 TMEM151BQ8IW70 566 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 C2orf73Q8N5S3 287 aaPredicted RBP14.31□□□□□ -0.12
CLN3-213ENST00000565047 ZBTB2Q8N680 514 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 CFAP61Q8NHU2 1237 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 SLC22A11Q9NSA0 550 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 IL1RAPL1Q9NZN1 696 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 ANAPC2Q9UJX6 822 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 PLCL2Q9UPR0 1127 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 MAN2B2Q9Y2E5 1009 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 AP1M2Q9Y6Q5 423 aa14.31□□□□□ -0.12
CLN3-213ENST00000565047 SDR42E2A6NKP2 422 aa14.3□□□□□ -0.12
CLN3-213ENST00000565047 PGRMC1O00264 195 aaKnown RBP14.3□□□□□ -0.12
CLN3-213ENST00000565047 ZNF185O15231 689 aa14.3□□□□□ -0.12
CLN3-213ENST00000565047 MAP3K7O43318 606 aa14.3□□□□□ -0.12
CLN3-213ENST00000565047 NRDCO43847 1150 aa14.3□□□□□ -0.12
CLN3-213ENST00000565047 KDM1AO60341 852 aa14.3□□□□□ -0.12
CLN3-213ENST00000565047 CNOT3O75175 753 aaKnown RBP14.3□□□□□ -0.12
CLN3-213ENST00000565047 RFPL1O75677 317 aa14.3□□□□□ -0.12
CLN3-213ENST00000565047 OR2B3O76000 313 aa14.3□□□□□ -0.12
CLN3-213ENST00000565047 ONECUT2O95948 504 aa14.3□□□□□ -0.12
CLN3-213ENST00000565047 RPN2P04844 631 aa14.3□□□□□ -0.12
CLN3-213ENST00000565047 HBQ1P09105 142 aa14.3□□□□□ -0.12
CLN3-213ENST00000565047 ERGP11308 486 aa14.3□□□□□ -0.12
CLN3-213ENST00000565047 ATP5DP30049 168 aa14.3□□□□□ -0.12
CLN3-213ENST00000565047 CLCN7P51798 805 aa14.3□□□□□ -0.12
CLN3-213ENST00000565047 TMED2Q15363 201 aa14.3□□□□□ -0.12
CLN3-213ENST00000565047 RNF187Q5TA31 235 aaPredicted RBP14.3□□□□□ -0.12
CLN3-213ENST00000565047 MRPL14Q6P1L8 145 aaKnown RBP14.3□□□□□ -0.12
CLN3-213ENST00000565047 ZNF549Q6P9A3 640 aa14.3□□□□□ -0.12
CLN3-213ENST00000565047 SDCCAG8Q86SQ7 713 aaPredicted RBP14.3□□□□□ -0.12
CLN3-213ENST00000565047 SLC22A18Q96BI1 424 aa14.3□□□□□ -0.12
CLN3-213ENST00000565047 SLC30A3Q99726 388 aa14.3□□□□□ -0.12
CLN3-213ENST00000565047 EURLQ9NYK6 297 aa14.3□□□□□ -0.12
CLN3-213ENST00000565047 SNX12Q9UMY4 172 aa14.3□□□□□ -0.12
CLN3-213ENST00000565047 CRYL1Q9Y2S2 319 aa14.3□□□□□ -0.12
CLN3-213ENST00000565047 H3BMM5 538 aa14.29□□□□□ -0.12
CLN3-213ENST00000565047 MKRN2OSH3BPM6 223 aa14.29□□□□□ -0.12
CLN3-213ENST00000565047 ZSCAN9O15535 394 aaPredicted RBP14.29□□□□□ -0.12
CLN3-213ENST00000565047 PHF2O75151 1096 aa14.29□□□□□ -0.12
CLN3-213ENST00000565047 F7P08709 466 aaPredicted RBP14.29□□□□□ -0.12
CLN3-213ENST00000565047 GRIA3P42263 894 aa14.29□□□□□ -0.12
CLN3-213ENST00000565047 PTGIRP43119 386 aa14.29□□□□□ -0.12
CLN3-213ENST00000565047 BDKRB1P46663 353 aa14.29□□□□□ -0.12
CLN3-213ENST00000565047 FNTAP49354 379 aa14.29□□□□□ -0.12
CLN3-213ENST00000565047 YBX1P67809 324 aaKnown RBP14.29□□□□□ -0.12
CLN3-213ENST00000565047 SARNPP82979 210 aaKnown RBP14.29□□□□□ -0.12
CLN3-213ENST00000565047 KCNC4Q03721 635 aa14.29□□□□□ -0.12
CLN3-213ENST00000565047 DHX34Q14147 1143 aaKnown RBP14.29□□□□□ -0.12
CLN3-213ENST00000565047 CYP2A13Q16696 494 aa14.29□□□□□ -0.12
CLN3-213ENST00000565047 ACSBG2Q5FVE4 666 aa14.29□□□□□ -0.12
CLN3-213ENST00000565047 EEF1AKMT2Q5JPI9 291 aaKnown RBP14.29□□□□□ -0.12
CLN3-213ENST00000565047 RNASEH2BQ5TBB1 312 aaKnown RBP14.29□□□□□ -0.12
CLN3-213ENST00000565047 TLDC1Q6P9B6 456 aa14.29□□□□□ -0.12
CLN3-213ENST00000565047 MCATQ8IVS2 390 aaKnown RBP14.29□□□□□ -0.12
CLN3-213ENST00000565047 DENND6AQ8IWF6 608 aa14.29□□□□□ -0.12
CLN3-213ENST00000565047 GPR135Q8IZ08 494 aa14.29□□□□□ -0.12
CLN3-213ENST00000565047 ZNF655Q8N720 491 aaPredicted RBP14.29□□□□□ -0.12
CLN3-213ENST00000565047 OR2A1Q8NGT9 310 aa14.29□□□□□ -0.12
CLN3-213ENST00000565047 GIMAP7Q8NHV1 300 aa14.29□□□□□ -0.12
CLN3-213ENST00000565047 PROKR1Q8TCW9 393 aa14.29□□□□□ -0.12
CLN3-213ENST00000565047 SLCO2A1Q92959 643 aa14.29□□□□□ -0.12
CLN3-213ENST00000565047 RAD51AP1Q96B01 352 aa14.29□□□□□ -0.12
CLN3-213ENST00000565047 NAP1L3Q99457 506 aaPredicted RBP14.29□□□□□ -0.12
CLN3-213ENST00000565047 DHRS4Q9BTZ2 278 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms