RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ITGAXP20702 1163 aa16.21■□□□□ 0.19
CLN3-211ENST00000564091 ITGA3P26006 1051 aa16.21■□□□□ 0.19
CLN3-211ENST00000564091 PKLRP30613 574 aa16.21■□□□□ 0.19
CLN3-211ENST00000564091 CCR7P32248 378 aa16.21■□□□□ 0.19
CLN3-211ENST00000564091 GRIA3P42263 894 aa16.21■□□□□ 0.19
CLN3-211ENST00000564091 PLOD1Q02809 727 aaPredicted RBP16.21■□□□□ 0.19
CLN3-211ENST00000564091 KLF1Q13351 362 aaPredicted RBP16.21■□□□□ 0.19
CLN3-211ENST00000564091 CRB2Q5IJ48 1285 aa16.21■□□□□ 0.19
CLN3-211ENST00000564091 RAD9BQ6WBX8 426 aa16.21■□□□□ 0.19
CLN3-211ENST00000564091 TTLL10Q6ZVT0 673 aa16.21■□□□□ 0.19
CLN3-211ENST00000564091 TAX1BP1Q86VP1 789 aa16.21■□□□□ 0.19
CLN3-211ENST00000564091 ZADH2Q8N4Q0 377 aa16.21■□□□□ 0.19
CLN3-211ENST00000564091 CFAP61Q8NHU2 1237 aa16.21■□□□□ 0.19
CLN3-211ENST00000564091 SLC35B2Q8TB61 432 aa16.21■□□□□ 0.19
CLN3-211ENST00000564091 LKAAEAR1Q8TD35 194 aa16.21■□□□□ 0.19
CLN3-211ENST00000564091 PCDHGA10Q9Y5H3 936 aa16.21■□□□□ 0.19
CLN3-211ENST00000564091 CSAG2Q9Y5P2 127 aa16.21■□□□□ 0.19
CLN3-211ENST00000564091 IQCF5A8MTL0 148 aa16.2■□□□□ 0.18
CLN3-211ENST00000564091 PSMD3O43242 534 aa16.2■□□□□ 0.18
CLN3-211ENST00000564091 IPO13O94829 963 aaKnown RBP16.2■□□□□ 0.18
CLN3-211ENST00000564091 IPO7O95373 1038 aaKnown RBP16.2■□□□□ 0.18
CLN3-211ENST00000564091 MCM3P25205 808 aa16.2■□□□□ 0.18
CLN3-211ENST00000564091 GRIA1P42261 906 aa16.2■□□□□ 0.18
CLN3-211ENST00000564091 GCGRP47871 477 aa16.2■□□□□ 0.18
CLN3-211ENST00000564091 RAB28P51157 221 aa16.2■□□□□ 0.18
CLN3-211ENST00000564091 SOX8P57073 446 aa16.2■□□□□ 0.18
CLN3-211ENST00000564091 HSPA14Q0VDF9 509 aa16.2■□□□□ 0.18
CLN3-211ENST00000564091 Q6ZS92 163 aa16.2■□□□□ 0.18
CLN3-211ENST00000564091 PEX26Q7Z412 305 aa16.2■□□□□ 0.18
CLN3-211ENST00000564091 DNAAF3Q8N9W5 541 aa16.2■□□□□ 0.18
CLN3-211ENST00000564091 ZDHHC19Q8WVZ1 309 aaPredicted RBP16.2■□□□□ 0.18
CLN3-211ENST00000564091 TM9SF4Q92544 642 aa16.2■□□□□ 0.18
CLN3-211ENST00000564091 ZNF778Q96MU6 729 aa16.2■□□□□ 0.18
CLN3-211ENST00000564091 PANX2Q96RD6 677 aa16.2■□□□□ 0.18
CLN3-211ENST00000564091 FBXL4Q9UKA2 621 aa16.2■□□□□ 0.18
CLN3-211ENST00000564091 AMFRQ9UKV5 643 aa16.2■□□□□ 0.18
CLN3-211ENST00000564091 SLC5A6Q9Y289 635 aa16.2■□□□□ 0.18
CLN3-211ENST00000564091 CSMD1Q96PZ7 3565 aa16.19■□□□□ 0.18
CLN3-211ENST00000564091 AGPSO00116 658 aa16.19■□□□□ 0.18
CLN3-211ENST00000564091 KDM1AO60341 852 aa16.19■□□□□ 0.18
CLN3-211ENST00000564091 KLHL41O60662 606 aa16.19■□□□□ 0.18
CLN3-211ENST00000564091 FTCDO95954 541 aa16.19■□□□□ 0.18
CLN3-211ENST00000564091 MMP11P24347 488 aa16.19■□□□□ 0.18
CLN3-211ENST00000564091 DCTP40126 519 aa16.19■□□□□ 0.18
CLN3-211ENST00000564091 SEMA3AQ14563 771 aa16.19■□□□□ 0.18
CLN3-211ENST00000564091 HIF1AQ16665 826 aa16.19■□□□□ 0.18
CLN3-211ENST00000564091 DNAJC21Q5F1R6 531 aaKnown RBP16.19■□□□□ 0.18
CLN3-211ENST00000564091 AFTPHQ6ULP2 937 aa16.19■□□□□ 0.18
CLN3-211ENST00000564091 SHISA6Q6ZSJ9 500 aa16.19■□□□□ 0.18
CLN3-211ENST00000564091 ZNF534Q76KX8 674 aa16.19■□□□□ 0.18
CLN3-211ENST00000564091 LINC00523Q86TU6 105 aa16.19■□□□□ 0.18
CLN3-211ENST00000564091 LDB1Q86U70 411 aaPredicted RBP16.19■□□□□ 0.18
CLN3-211ENST00000564091 SLC22A15Q8IZD6 547 aa16.19■□□□□ 0.18
CLN3-211ENST00000564091 UBL4BQ8N7F7 174 aa16.19■□□□□ 0.18
CLN3-211ENST00000564091 OR6P1Q8NGX9 317 aa16.19■□□□□ 0.18
CLN3-211ENST00000564091 ATG4AQ8WYN0 398 aa16.19■□□□□ 0.18
CLN3-211ENST00000564091 C5orf34Q96MH7 638 aa16.19■□□□□ 0.18
CLN3-211ENST00000564091 MENTQ9BUN1 341 aa16.19■□□□□ 0.18
CLN3-211ENST00000564091 ETNK1Q9HBU6 452 aa16.19■□□□□ 0.18
CLN3-211ENST00000564091 SLC6A20Q9NP91 592 aa16.19■□□□□ 0.18
CLN3-211ENST00000564091 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.19■□□□□ 0.18
CLN3-211ENST00000564091 CDC23Q9UJX2 597 aa16.19■□□□□ 0.18
CLN3-211ENST00000564091 A0A1B0GX78 115 aa16.18■□□□□ 0.18
CLN3-211ENST00000564091 HEATR9A2RTY3 570 aa16.18■□□□□ 0.18
CLN3-211ENST00000564091 GPC4O75487 556 aa16.18■□□□□ 0.18
CLN3-211ENST00000564091 CD9P21926 228 aa16.18■□□□□ 0.18
CLN3-211ENST00000564091 ARSFP54793 590 aa16.18■□□□□ 0.18
CLN3-211ENST00000564091 CDH17Q12864 832 aa16.18■□□□□ 0.18
CLN3-211ENST00000564091 AIMP2Q13155 320 aaKnown RBP16.18■□□□□ 0.18
CLN3-211ENST00000564091 ELOAQ14241 798 aaKnown RBP16.18■□□□□ 0.18
CLN3-211ENST00000564091 GRB7Q14451 532 aa16.18■□□□□ 0.18
CLN3-211ENST00000564091 NKG7Q16617 165 aa16.18■□□□□ 0.18
CLN3-211ENST00000564091 TSTD2Q5T7W7 516 aa16.18■□□□□ 0.18
CLN3-211ENST00000564091 FCRL6Q6DN72 434 aa16.18■□□□□ 0.18
CLN3-211ENST00000564091 COX15Q7KZN9 410 aa16.18■□□□□ 0.18
CLN3-211ENST00000564091 OVCH1Q7RTY7 1134 aa16.18■□□□□ 0.18
CLN3-211ENST00000564091 PRUNE1Q86TP1 453 aa16.18■□□□□ 0.18
CLN3-211ENST00000564091 KRT222Q8N1A0 295 aa16.18■□□□□ 0.18
CLN3-211ENST00000564091 METTL27Q8N6F8 245 aaPredicted RBP16.18■□□□□ 0.18
CLN3-211ENST00000564091 OR4L1Q8NH43 312 aa16.18■□□□□ 0.18
CLN3-211ENST00000564091 DLG3Q92796 817 aa16.18■□□□□ 0.18
CLN3-211ENST00000564091 TTC1Q99614 292 aa16.18■□□□□ 0.18
CLN3-211ENST00000564091 SPSB2Q99619 263 aa16.18■□□□□ 0.18
CLN3-211ENST00000564091 BARD1Q99728 777 aaKnown RBP16.18■□□□□ 0.18
CLN3-211ENST00000564091 SOX17Q9H6I2 414 aaPredicted RBP16.18■□□□□ 0.18
CLN3-211ENST00000564091 CUTCQ9NTM9 273 aa16.18■□□□□ 0.18
CLN3-211ENST00000564091 CELSR2Q9HCU4 2923 aa16.17■□□□□ 0.18
CLN3-211ENST00000564091 A0A0U1RQJ8 604 aa16.17■□□□□ 0.18
CLN3-211ENST00000564091 SOCS6O14544 535 aa16.17■□□□□ 0.18
CLN3-211ENST00000564091 GAS8O95995 478 aa16.17■□□□□ 0.18
CLN3-211ENST00000564091 OR1D4P47884 311 aa16.17■□□□□ 0.18
CLN3-211ENST00000564091 SF1Q15637 639 aaKnown RBP16.17■□□□□ 0.18
CLN3-211ENST00000564091 PRAMEF13Q5VWM6 474 aa16.17■□□□□ 0.18
CLN3-211ENST00000564091 FIGLAQ6QHK4 219 aa16.17■□□□□ 0.18
CLN3-211ENST00000564091 KIRREL2Q6UWL6 708 aa16.17■□□□□ 0.18
CLN3-211ENST00000564091 PPP1R21Q6ZMI0 780 aa16.17■□□□□ 0.18
CLN3-211ENST00000564091 DCUN1D3Q8IWE4 304 aa16.17■□□□□ 0.18
CLN3-211ENST00000564091 PARP9Q8IXQ6 854 aa16.17■□□□□ 0.18
CLN3-211ENST00000564091 DTWD1Q8N5C7 304 aa16.17■□□□□ 0.18
CLN3-211ENST00000564091 UBE2Q2Q8WVN8 375 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms