RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 MPP7Q5T2T1 576 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 RRAGBQ5VZM2 374 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 KCTD16Q68DU8 428 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 CLEC6AQ6EIG7 209 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 TRAT1Q6PIZ9 186 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 USP17L6PQ6QN14 398 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 AFTPHQ6ULP2 937 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 FAM83HQ6ZRV2 1179 aaPredicted RBP4.99□□□□□ -1.61
VPS35-205ENST00000563984 PARS2Q7L3T8 475 aaKnown RBP4.99□□□□□ -1.61
VPS35-205ENST00000563984 ZNF280BQ86YH2 543 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 MMAAQ8IVH4 418 aaKnown RBP4.99□□□□□ -1.61
VPS35-205ENST00000563984 CNTN4Q8IWV2 1026 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 BBS7Q8IWZ6 715 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 GPR65Q8IYL9 337 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 KIRREL3Q8IZU9 778 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 FNDC5Q8NAU1 212 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 OR52N1Q8NH53 320 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 IL31RAQ8NI17 732 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 SETD6Q8TBK2 473 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 SLC2A14Q8TDB8 520 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 CD300LFQ8TDQ1 290 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 KCTD4Q8WVF5 259 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 P3H4Q92791 437 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 GLG1Q92896 1179 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 NT5C3BQ969T7 300 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 PHF21AQ96BD5 680 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 OTUB2Q96DC9 234 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 ZFYVE19Q96K21 471 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 QRFPRQ96P65 431 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 TEX12Q9BXU0 123 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 ADGRE3Q9BY15 652 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 SLC5A7Q9GZV3 580 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 MTIF3Q9H2K0 278 aaKnown RBP4.99□□□□□ -1.61
VPS35-205ENST00000563984 MOV10Q9HCE1 1003 aaKnown RBP4.99□□□□□ -1.61
VPS35-205ENST00000563984 DUSP22Q9NRW4 184 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 PLCXD1Q9NUJ7 323 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 UFSP2Q9NUQ7 469 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 CMTM6Q9NX76 183 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 FLRT1Q9NZU1 646 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 CTSFQ9UBX1 484 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 LIMA1Q9UHB6 759 aaKnown RBP4.99□□□□□ -1.61
VPS35-205ENST00000563984 NARFQ9UHQ1 456 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 FEM1BQ9UK73 627 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 NUP50Q9UKX7 468 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 STAP1Q9ULZ2 295 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 MRPS17Q9Y2R5 130 aaKnown RBP4.99□□□□□ -1.61
VPS35-205ENST00000563984 LRRC42Q9Y546 428 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.99□□□□□ -1.61
VPS35-205ENST00000563984 SNX13Q9Y5W8 968 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 PLEKHH1Q9ULM0 1364 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 CEP164Q9UPV0 1460 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 KIAA1217Q5T5P2 1943 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 A0A0B4J293 547 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 OR5K3A6NET4 321 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 ZNF98A6NK75 572 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 CGB1A6NKQ9 187 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 LINC01548A6NM66 108 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 PTGES3LE9PB15 166 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 ATP6V1G2-DDX39BF2Z307 99 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 TRIM77I1YAP6 450 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 ZNF213O14771 459 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 VILLO15195 856 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 ALOX15BO15296 676 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 LRRTM2O43300 516 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 B4GAT1O43505 415 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 CALUO43852 315 aaPredicted RBP4.98□□□□□ -1.61
VPS35-205ENST00000563984 VEGFDO43915 354 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 DNAJB6O75190 326 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 CLPXO76031 633 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 TJP3O95049 919 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 DEXIO95424 95 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 BAG3O95817 575 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 CRYABP02511 175 aaKnown RBP4.98□□□□□ -1.61
VPS35-205ENST00000563984 IFNA16P05015 189 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 CRYGCP07315 174 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 CSF1RP07333 972 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 KRT19P08727 400 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 GNAO1P09471 354 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 OR4E1P0C645 316 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 ADRA1DP25100 572 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 HOXA9P31269 272 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 HTR7P34969 479 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 IGHMBP2P38935 993 aaKnown RBP4.98□□□□□ -1.61
VPS35-205ENST00000563984 GPD2P43304 727 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 KIR3DL2P43630 455 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 CCR10P46092 362 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 SLC1A6P48664 564 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 CCNG1P51959 295 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 OAZ1P54368 228 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 PDE1AP54750 535 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 ATP5IP56385 69 aaPredicted RBP4.98□□□□□ -1.61
VPS35-205ENST00000563984 RPS8P62241 208 aaKnown RBP4.98□□□□□ -1.61
VPS35-205ENST00000563984 XIAPP98170 497 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 TFF2Q03403 129 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 ZNF33AQ06730 810 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 SRSF4Q08170 494 aaKnown RBP4.98□□□□□ -1.61
VPS35-205ENST00000563984 SLC10A2Q12908 348 aaPredicted RBP4.98□□□□□ -1.61
VPS35-205ENST00000563984 CAPSQ13938 189 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 HFEQ30201 348 aa4.98□□□□□ -1.61
VPS35-205ENST00000563984 GTDC1Q4AE62 458 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms