RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 CHRM5P08912 532 aaPredicted RBP12.41□□□□□ -0.42
SHMT2-227ENST00000557269 ENO2P09104 434 aaPredicted RBP12.41□□□□□ -0.42
SHMT2-227ENST00000557269 MTHFD2P13995 350 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 NCF1P14598 390 aaPredicted RBP12.41□□□□□ -0.42
SHMT2-227ENST00000557269 AMD1P17707 334 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 HOXD11P31277 338 aaPredicted RBP12.41□□□□□ -0.42
SHMT2-227ENST00000557269 SHMT2P34897 504 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 CAPZBP47756 277 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 PNLIPRP1P54315 467 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 GFERP55789 205 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 YBX1P67809 324 aaKnown RBP12.41□□□□□ -0.42
SHMT2-227ENST00000557269 GPLD1P80108 840 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 ILKQ13418 452 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 SQSTM1Q13501 440 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 TGFBIQ15582 683 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 FBXO48Q5FWF7 155 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 SUSD1Q6UWL2 747 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 EXOC3L1Q86VI1 746 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 FAM20CQ8IXL6 584 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 COL27A1Q8IZC6 1860 aaPredicted RBP12.41□□□□□ -0.42
SHMT2-227ENST00000557269 BANPQ8N9N5 519 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 OR2L8Q8NGY9 312 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 STAG3L4Q8TBR4 150 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 PGM2Q96G03 612 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 SCYL1Q96KG9 808 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 CCDC138Q96M89 665 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 ATG10Q9H0Y0 220 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 ABCG4Q9H172 646 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 SEMA6CQ9H3T2 930 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 TMBIM4Q9HC24 238 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 CPSF2Q9P2I0 782 aaKnown RBP12.41□□□□□ -0.42
SHMT2-227ENST00000557269 RNF112Q9ULX5 631 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 PCDHGA1Q9Y5H4 931 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 CFAP54Q96N23 3096 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 FAM221BA6H8Z2 402 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 TARM1B6A8C7 271 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 E7ENX8 843 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 TK2O00142 265 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 CAPN5O15484 640 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-227ENST00000557269 DUX1O43812 170 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 KIF1CO43896 1103 aaKnown RBP12.4□□□□□ -0.42
SHMT2-227ENST00000557269 PRICKLE3O43900 615 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-227ENST00000557269 SPAG7O75391 227 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 HIST1H2AGP0C0S8 130 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-227ENST00000557269 MYZAPP0CAP1 466 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 HIST1H2ADP20671 130 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 SDHBP21912 280 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 KCNA4P22459 653 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 PSMB5P28074 263 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 CRHR1P34998 444 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 LSSP48449 732 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 PPM1FP49593 454 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-227ENST00000557269 KPNA2P52292 529 aaKnown RBP12.4□□□□□ -0.42
SHMT2-227ENST00000557269 PDX1P52945 283 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 AP1S2P56377 157 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 E2F1Q01094 437 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 TAP2Q03519 686 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 TSNAXIP1Q2TAA8 658 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 N4BP2L1Q5TBK1 243 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-227ENST00000557269 CDCP2Q5VXM1 449 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 ANKS6Q68DC2 871 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 KLC3Q6P597 504 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 AGTRAPQ6RW13 159 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 FAM92BQ6ZTR7 304 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 FRA10AC1Q70Z53 315 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 B3GNT8Q7Z7M8 397 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 TRIM73Q86UV7 250 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 MARCH9Q86YJ5 346 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 RHEBL1Q8TAI7 183 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 HMGCLL1Q8TB92 370 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 ESAMQ96AP7 390 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 ARL8AQ96BM9 186 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 RHBDF1Q96CC6 855 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 FBXL8Q96CD0 374 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 AHCYL2Q96HN2 611 aaKnown RBP12.4□□□□□ -0.42
SHMT2-227ENST00000557269 HIST1H2AHQ96KK5 128 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 TGM7Q96PF1 710 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 OR2A14Q96R47 310 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 GFM1Q96RP9 751 aaKnown RBP12.4□□□□□ -0.42
SHMT2-227ENST00000557269 HIST1H2AJQ99878 128 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 H2AFJQ9BTM1 129 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 TRIM54Q9BYV2 358 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 VIPAS39Q9H9C1 493 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 ACTR10Q9NZ32 417 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 OR6C2Q9NZP2 312 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 SPATA7Q9P0W8 599 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 XPR1Q9UBH6 696 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 DCDC2Q9UHG0 476 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 LNPEPQ9UIQ6 1025 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 ASB1Q9Y576 335 aa12.4□□□□□ -0.42
SHMT2-227ENST00000557269 PIPSLA2A3N6 862 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 GSAPA4D1B5 854 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 SUPT3HB4E1H0 165 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 D6RAR5 112 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 COPEO14579 308 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 SUPT3HO75486 399 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 CPNE6O95741 557 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 C9P02748 559 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 GSTA1P08263 222 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 UGT2B7P16662 529 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms