RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 CEP97Q8IW35 865 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 MYO1HQ8N1T3 1032 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 PLD6Q8N2A8 252 aaKnown RBP8.18□□□□□ -1.1
CHD4-208ENST00000540960 NXPE1Q8N323 547 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 TCAIMQ8N3R3 496 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 FITM2Q8N6M3 262 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 CCNYL1Q8N7R7 359 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 OR2A12Q8NGT7 310 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 OR2T3Q8NH03 318 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 WFDC5Q8TCV5 224 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 SKA1Q96BD8 255 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 ERP27Q96DN0 273 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 ZNF514Q96K75 400 aaPredicted RBP8.18□□□□□ -1.1
CHD4-208ENST00000540960 NDNQ99608 321 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 MECRQ9BV79 373 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 GATA5Q9BWX5 397 aaPredicted RBP8.18□□□□□ -1.1
CHD4-208ENST00000540960 ERVK-6Q9BXR3 956 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 LRMDAQ9H2I8 198 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 TNKS2Q9H2K2 1166 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 FAM83DQ9H4H8 585 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 SUDS3Q9H7L9 328 aaPredicted RBP8.18□□□□□ -1.1
CHD4-208ENST00000540960 LATS2Q9NRM7 1088 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 SPATS2LQ9NUQ6 558 aaKnown RBP8.18□□□□□ -1.1
CHD4-208ENST00000540960 TMEM45AQ9NWC5 275 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 NUDT4Q9NZJ9 180 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 MARCH4Q9P2E8 410 aaPredicted RBP8.18□□□□□ -1.1
CHD4-208ENST00000540960 CPSF2Q9P2I0 782 aaKnown RBP8.18□□□□□ -1.1
CHD4-208ENST00000540960 SERGEFQ9UGK8 458 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 ACSL6Q9UKU0 697 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 RNF112Q9ULX5 631 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 CDYLQ9Y232 598 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 KCTD3Q9Y597 815 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 CAPN7Q9Y6W3 813 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 DOCK4Q8N1I0 1966 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 PRRC2CQ9Y520 2896 aaKnown RBP8.18□□□□□ -1.1
CHD4-208ENST00000540960 CCDC187A0A096LP49 1063 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 AGAP14A8MT82 685 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 MATN2O00339 956 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 FCHO1O14526 889 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 RAD51BO15315 384 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 SLC16A5O15375 505 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 ZNF821O75541 412 aaPredicted RBP8.17□□□□□ -1.1
CHD4-208ENST00000540960 CRCPO75575 148 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 WISP3O95389 354 aaPredicted RBP8.17□□□□□ -1.1
CHD4-208ENST00000540960 SLC4A1P02730 911 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 FTH1P02794 183 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 UGT2B4P06133 528 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 FGF4P08620 206 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 ENO2P09104 434 aaPredicted RBP8.17□□□□□ -1.1
CHD4-208ENST00000540960 GFAPP14136 432 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 CD1DP15813 335 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 CTPS1P17812 591 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 VCLP18206 1134 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 ACRV1P26436 265 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 PTPN4P29074 926 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 UGT1A5P35504 534 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 GLRBP48167 497 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 SPINT3P49223 89 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 ALDH18A1P54886 795 aaKnown RBP8.17□□□□□ -1.1
CHD4-208ENST00000540960 CDKN2DP55273 166 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 XIAPP98170 497 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 IRF9Q00978 393 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 OVGP1Q12889 678 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 PEX6Q13608 980 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 CDKN3Q16667 212 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 HNRNPA1L2Q32P51 320 aaKnown RBP8.17□□□□□ -1.1
CHD4-208ENST00000540960 FNDC3BQ53EP0 1204 aaKnown RBP8.17□□□□□ -1.1
CHD4-208ENST00000540960 ARL13AQ5H913 290 aaPredicted RBP8.17□□□□□ -1.1
CHD4-208ENST00000540960 RBM20Q5T481 1227 aaKnown RBP8.17□□□□□ -1.1
CHD4-208ENST00000540960 ANKS6Q68DC2 871 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 EPGNQ6UW88 154 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 SPNS3Q6ZMD2 512 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 RBM44Q6ZP01 1051 aaKnown RBP8.17□□□□□ -1.1
CHD4-208ENST00000540960 NEK10Q6ZWH5 1172 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 FRA10AC1Q70Z53 315 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 DPPA4Q7L190 304 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 TIPARPQ7Z3E1 657 aaKnown RBP8.17□□□□□ -1.1
CHD4-208ENST00000540960 TTC7BQ86TV6 843 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 ISCA2Q86U28 154 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 SERPINA9Q86WD7 417 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 GPSM1Q86YR5 675 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 CLYBLQ8N0X4 340 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 SLC34A3Q8N130 599 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 FBXO39Q8N4B4 442 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 TRAM1L1Q8N609 369 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 CFAP61Q8NHU2 1237 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 PRR7Q8TB68 274 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 FRS2Q8WU20 508 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 RPL10LQ96L21 214 aaKnown RBP8.17□□□□□ -1.1
CHD4-208ENST00000540960 LURAP1Q96LR2 239 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 KLHL32Q96NJ5 620 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 OLFM1Q99784 485 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 MYLK2Q9H1R3 596 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 P2RY12Q9H244 342 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 IL26Q9NPH9 171 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 MRPL40Q9NQ50 206 aaKnown RBP8.17□□□□□ -1.1
CHD4-208ENST00000540960 ABCF3Q9NUQ8 709 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 BCAP29Q9UHQ4 241 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 TAGLN3Q9UI15 199 aa8.17□□□□□ -1.1
CHD4-208ENST00000540960 PRAMEF33A0A0G2JMD5 474 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms