RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 SIDT2Q8NBJ9 832 aaKnown RBP7.23□□□□□ -1.25
CD44-228ENST00000528455 RHEBL1Q8TAI7 183 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 STAG3L4Q8TBR4 150 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 HM13Q8TCT9 377 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 CD200R1Q8TD46 325 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 DENND1AQ8TEH3 1009 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 ANKRD49Q8WVL7 239 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 ASB11Q8WXH4 323 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 ELMO1Q92556 727 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 PIGKQ92643 395 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 TSACCQ96A04 125 aaPredicted RBP7.23□□□□□ -1.25
CD44-228ENST00000528455 TMEM159Q96B96 161 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 NXNL1Q96CM4 212 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 EAF1Q96JC9 268 aaPredicted RBP7.23□□□□□ -1.25
CD44-228ENST00000528455 SLC6A18Q96N87 628 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 TSNARE1Q96NA8 513 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 GPR78Q96P69 363 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 MYOCQ99972 504 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 YIPF2Q9BWQ6 316 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 VPS11Q9H270 941 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 C7orf69Q9H7B7 122 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 SARS2Q9NP81 518 aaKnown RBP7.23□□□□□ -1.25
CD44-228ENST00000528455 KCNK9Q9NPC2 374 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 WASH6PQ9NQA3 447 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 TMEM74BQ9NUR3 256 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 SLC23A2Q9UGH3 650 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 PCOLCE2Q9UKZ9 415 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 SUFUQ9UMX1 484 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 CDYLQ9Y232 598 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 CA5BQ9Y2D0 317 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.23□□□□□ -1.25
CD44-228ENST00000528455 PCM1Q15154 2024 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 MED19A0JLT2 244 aaPredicted RBP7.22□□□□□ -1.25
CD44-228ENST00000528455 PRAMEF27A3QJZ7 478 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 OR5K4A6NMS3 321 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 FOXO6A8MYZ6 492 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 GOLGA8RI6L899 631 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 SLC16A5O15375 505 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 PHGDHO43175 533 aaKnown RBP7.22□□□□□ -1.25
CD44-228ENST00000528455 DYRK3O43781 588 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 ZBTB14O43829 449 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 ZWINTO95229 277 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 TSPAN12O95859 305 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 F7P08709 466 aaPredicted RBP7.22□□□□□ -1.25
CD44-228ENST00000528455 NME1P15531 152 aaKnown RBP7.22□□□□□ -1.25
CD44-228ENST00000528455 CD1DP15813 335 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 CREB1P16220 341 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 ACADLP28330 430 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 RXRGP48443 463 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 CSNK1EP49674 416 aaKnown RBP7.22□□□□□ -1.25
CD44-228ENST00000528455 C21orf59P57076 290 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 NXPH1P58417 271 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 HNRNPKP61978 463 aaKnown RBP eCLIP7.22□□□□□ -1.25
CD44-228ENST00000528455 PPP2R2AP63151 447 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 EIF2B5Q13144 721 aaKnown RBP7.22□□□□□ -1.25
CD44-228ENST00000528455 MPP2Q14168 576 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 ALG11Q2TAA5 492 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 ACSBG2Q5FVE4 666 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 TPRG1LQ5T0D9 272 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 STPG1Q5TH74 334 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 CAPRIN2Q6IMN6 1127 aaKnown RBP7.22□□□□□ -1.25
CD44-228ENST00000528455 SLC23A3Q6PIS1 610 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 DOK6Q6PKX4 331 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 LVRNQ6Q4G3 990 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 SEZ6L2Q6UXD5 910 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 ARMCX6Q7L4S7 300 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 RD3Q7Z3Z2 195 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 PARGQ86W56 976 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 SPATS2Q86XZ4 545 aaKnown RBP7.22□□□□□ -1.25
CD44-228ENST00000528455 RASGRP3Q8IV61 690 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 SLC22A15Q8IZD6 547 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 CENPLQ8N0S6 344 aaPredicted RBP7.22□□□□□ -1.25
CD44-228ENST00000528455 PLD6Q8N2A8 252 aaKnown RBP7.22□□□□□ -1.25
CD44-228ENST00000528455 FSTL5Q8N475 847 aaPredicted RBP7.22□□□□□ -1.25
CD44-228ENST00000528455 ZFPM2Q8WW38 1151 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 OR1E3Q8WZA6 343 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 KIAA1191Q96A73 305 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 OR2M4Q96R27 311 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 MRPL57Q9BQC6 102 aaKnown RBP7.22□□□□□ -1.25
CD44-228ENST00000528455 SLC12A9Q9BXP2 914 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 TRIM54Q9BYV2 358 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 ZDHHC5Q9C0B5 715 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 TGIF2Q9GZN2 237 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 WNT10AQ9GZT5 417 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 SMOC1Q9H4F8 434 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 CARS2Q9HA77 564 aaKnown RBP7.22□□□□□ -1.25
CD44-228ENST00000528455 RDH14Q9HBH5 336 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 FGF22Q9HCT0 170 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 MRPL40Q9NQ50 206 aaKnown RBP7.22□□□□□ -1.25
CD44-228ENST00000528455 KLC4Q9NSK0 619 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 TMEM216Q9P0N5 145 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 KLQ9UEF7 1012 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 MOSPD1Q9UJG1 213 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 CSNK1G3Q9Y6M4 447 aa7.22□□□□□ -1.25
CD44-228ENST00000528455 ANKRD12Q6UB98 2062 aa7.21□□□□□ -1.25
CD44-228ENST00000528455 NEMP2A6NFY4 417 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 TARM1B6A8C7 271 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 BIRC5O15392 142 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 BPNT1O95861 308 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 C8GP07360 202 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms