RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 CEP70Q8NHQ1 597 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 C19orf60Q96EN9 201 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 ACTR8Q9H981 624 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 WASH6PQ9NQA3 447 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 IMP3Q9NV31 184 aaKnown RBP20.42■□□□□ 0.86
VPS28-208ENST00000527797 TRPS1Q9UHF7 1281 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 LNPEPQ9UIQ6 1025 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 TRIM33Q9UPN9 1127 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 E9PBE3 544 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 PIP5K1BO14986 540 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 KLHL41O60662 606 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 UBOX5O94941 541 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 CLDN9O95484 217 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 MAOBP27338 520 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 HMOX2P30519 316 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 HSD17B2P37059 387 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 ACTR1BP42025 376 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 PNLIPRP1P54315 467 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 ACTR1AP61163 376 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 ILF3Q12906 894 aaKnown RBP eCLIP20.41■□□□□ 0.86
VPS28-208ENST00000527797 GRB7Q14451 532 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 KRT33BQ14525 404 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 TJAP1Q5JTD0 557 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 FAM219BQ5XKK7 198 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 TSSK4Q6SA08 328 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 ABRAXAS1Q6UWZ7 409 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 CCL4L1Q8NHW4 92 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 ACTRT2Q8TDY3 377 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 ATXN2Q99700 1313 aaKnown RBP20.41■□□□□ 0.86
VPS28-208ENST00000527797 MIR1-1HGQ9H1L0 117 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 MVB12BQ9H7P6 319 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 SPATA7Q9P0W8 599 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 TBC1D29Q9UFV1 150 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 POLG2Q9UHN1 485 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 HEBP2Q9Y5Z4 205 aa20.41■□□□□ 0.86
VPS28-208ENST00000527797 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa20.4■□□□□ 0.86
VPS28-208ENST00000527797 A0A1W2PR77 199 aa20.4■□□□□ 0.86
VPS28-208ENST00000527797 NCF2P19878 526 aaPredicted RBP20.4■□□□□ 0.86
VPS28-208ENST00000527797 ARHGAP19Q14CB8 494 aa20.4■□□□□ 0.86
VPS28-208ENST00000527797 RPE65Q16518 533 aa20.4■□□□□ 0.86
VPS28-208ENST00000527797 SPDYAQ5MJ70 313 aa20.4■□□□□ 0.86
VPS28-208ENST00000527797 DUS1LQ6P1R4 473 aaKnown RBP20.4■□□□□ 0.86
VPS28-208ENST00000527797 IQCHQ86VS3 1027 aa20.4■□□□□ 0.86
VPS28-208ENST00000527797 PARGQ86W56 976 aa20.4■□□□□ 0.86
VPS28-208ENST00000527797 TMEFF1Q8IYR6 380 aa20.4■□□□□ 0.86
VPS28-208ENST00000527797 RGL4Q8IZJ4 473 aa20.4■□□□□ 0.86
VPS28-208ENST00000527797 MAGEB10Q96LZ2 347 aaPredicted RBP20.4■□□□□ 0.86
VPS28-208ENST00000527797 CCT7Q99832 543 aa20.4■□□□□ 0.86
VPS28-208ENST00000527797 DUSP15Q9H1R2 295 aaPredicted RBP20.4■□□□□ 0.86
VPS28-208ENST00000527797 TUBB1Q9H4B7 451 aa20.4■□□□□ 0.86
VPS28-208ENST00000527797 PRMT8Q9NR22 394 aaPredicted RBP20.4■□□□□ 0.86
VPS28-208ENST00000527797 PCOLCE2Q9UKZ9 415 aa20.4■□□□□ 0.86
VPS28-208ENST00000527797 PLAGL1Q9UM63 463 aa20.4■□□□□ 0.86
VPS28-208ENST00000527797 BTRCQ9Y297 605 aa20.4■□□□□ 0.86
VPS28-208ENST00000527797 RNF11Q9Y3C5 154 aa20.4■□□□□ 0.86
VPS28-208ENST00000527797 ZNF839A8K0R7 811 aa20.39■□□□□ 0.86
VPS28-208ENST00000527797 E7ENX8 843 aa20.39■□□□□ 0.86
VPS28-208ENST00000527797 LAMTOR5O43504 91 aa20.39■□□□□ 0.86
VPS28-208ENST00000527797 FNTBP49356 437 aa20.39■□□□□ 0.86
VPS28-208ENST00000527797 BLKP51451 505 aa20.39■□□□□ 0.86
VPS28-208ENST00000527797 HNRNPH2P55795 449 aaKnown RBP20.39■□□□□ 0.86
VPS28-208ENST00000527797 TBPL1P62380 186 aa20.39■□□□□ 0.86
VPS28-208ENST00000527797 TAP2Q03519 686 aa20.39■□□□□ 0.86
VPS28-208ENST00000527797 DMTNQ08495 405 aa20.39■□□□□ 0.86
VPS28-208ENST00000527797 GALNTL6Q49A17 601 aa20.39■□□□□ 0.86
VPS28-208ENST00000527797 SLC30A9Q6PML9 568 aa20.39■□□□□ 0.86
VPS28-208ENST00000527797 MYLK4Q86YV6 388 aaPredicted RBP20.39■□□□□ 0.86
VPS28-208ENST00000527797 RAB42Q8N4Z0 105 aa20.39■□□□□ 0.86
VPS28-208ENST00000527797 GSDMCQ9BYG8 508 aa20.39■□□□□ 0.86
VPS28-208ENST00000527797 SLC29A3Q9BZD2 475 aa20.39■□□□□ 0.86
VPS28-208ENST00000527797 OR52A4PA6NMU1 304 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 CLGNO14967 610 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 VPS4BO75351 444 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 WNT1P04628 370 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 LINC00032P0C843 101 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 MTHFD1P11586 935 aaKnown RBP20.38■□□□□ 0.85
VPS28-208ENST00000527797 CCND1P24385 295 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 TSTA3Q13630 321 aaPredicted RBP20.38■□□□□ 0.85
VPS28-208ENST00000527797 TCEA2Q15560 299 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 FAM91A1Q658Y4 838 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 WDR5BQ86VZ2 330 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 NRROSQ86YC3 692 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 LRRC56Q8IYG6 542 aaPredicted RBP20.38■□□□□ 0.85
VPS28-208ENST00000527797 PHACTR4Q8IZ21 702 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 GPBAR1Q8TDU6 330 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 PRR11Q96HE9 360 aaPredicted RBP20.38■□□□□ 0.85
VPS28-208ENST00000527797 C3orf30Q96M34 536 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 CAMK1GQ96NX5 476 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 IL17FQ96PD4 163 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 OR4K3Q96R72 315 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 MIPEPQ99797 713 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 SGPP1Q9BX95 441 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 TM9SF3Q9HD45 589 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 CCDC177Q9NQR7 707 aaPredicted RBP20.38■□□□□ 0.85
VPS28-208ENST00000527797 SAR1AQ9NR31 198 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 GPRC5BQ9NZH0 403 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 SCHIP1Q9P0W5 487 aaPredicted RBP20.38■□□□□ 0.85
VPS28-208ENST00000527797 KCNE2Q9Y6J6 123 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 COLEC10Q9Y6Z7 277 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 TMEM221A6NGB7 291 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms