RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 SLC5A12Q1EHB4 618 aa13.7□□□□□ -0.22
CPSF1-201ENST00000526271 LYPLAL1Q5VWZ2 237 aa13.7□□□□□ -0.22
CPSF1-201ENST00000526271 ZNF324BQ6AW86 544 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-201ENST00000526271 ITPRIPL1Q6GPH6 555 aa13.7□□□□□ -0.22
CPSF1-201ENST00000526271 TBC1D21Q8IYX1 336 aa13.7□□□□□ -0.22
CPSF1-201ENST00000526271 C2orf73Q8N5S3 287 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-201ENST00000526271 TTC13Q8NBP0 860 aa13.7□□□□□ -0.22
CPSF1-201ENST00000526271 CLEC1AQ8NC01 280 aa13.7□□□□□ -0.22
CPSF1-201ENST00000526271 CATSPER1Q8NEC5 780 aa13.7□□□□□ -0.22
CPSF1-201ENST00000526271 OR13J1Q8NGT2 312 aa13.7□□□□□ -0.22
CPSF1-201ENST00000526271 OR5K2Q8NHB8 316 aa13.7□□□□□ -0.22
CPSF1-201ENST00000526271 PPP4R1Q8TF05 950 aa13.7□□□□□ -0.22
CPSF1-201ENST00000526271 IP6K3Q96PC2 410 aa13.7□□□□□ -0.22
CPSF1-201ENST00000526271 SLX1AQ9BQ83 275 aa13.7□□□□□ -0.22
CPSF1-201ENST00000526271 OSBPL8Q9BZF1 889 aa13.7□□□□□ -0.22
CPSF1-201ENST00000526271 UNKQ9C0B0 810 aaKnown RBP13.7□□□□□ -0.22
CPSF1-201ENST00000526271 SLC7A5P2Q9GIP4 190 aa13.7□□□□□ -0.22
CPSF1-201ENST00000526271 ATP13A2Q9NQ11 1180 aa13.7□□□□□ -0.22
CPSF1-201ENST00000526271 ENAMQ9NRM1 1142 aa13.7□□□□□ -0.22
CPSF1-201ENST00000526271 SMARCAL1Q9NZC9 954 aa13.7□□□□□ -0.22
CPSF1-201ENST00000526271 ASF1AQ9Y294 204 aa13.7□□□□□ -0.22
CPSF1-201ENST00000526271 TDRKHQ9Y2W6 561 aaKnown RBP13.7□□□□□ -0.22
CPSF1-201ENST00000526271 AAR2Q9Y312 384 aaKnown RBP13.7□□□□□ -0.22
CPSF1-201ENST00000526271 REXO2Q9Y3B8 237 aaKnown RBP13.7□□□□□ -0.22
CPSF1-201ENST00000526271 DUSP10Q9Y6W6 482 aa13.7□□□□□ -0.22
CPSF1-201ENST00000526271 SETD2Q9BYW2 2564 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-201ENST00000526271 VSTM2BA6NLU5 285 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 LIN7AO14910 233 aaPredicted RBP13.69□□□□□ -0.22
CPSF1-201ENST00000526271 PRICKLE3O43900 615 aaPredicted RBP13.69□□□□□ -0.22
CPSF1-201ENST00000526271 GRNP28799 593 aaKnown RBP13.69□□□□□ -0.22
CPSF1-201ENST00000526271 CCR7P32248 378 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 PTPN7P35236 360 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 GRIA3P42263 894 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 TNNT3P45378 269 aaPredicted RBP13.69□□□□□ -0.22
CPSF1-201ENST00000526271 TDGF1P3P51864 188 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 SNRPNP63162 240 aaKnown RBP13.69□□□□□ -0.22
CPSF1-201ENST00000526271 YBX1P67809 324 aaKnown RBP13.69□□□□□ -0.22
CPSF1-201ENST00000526271 CACNG1Q06432 222 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 POU6F1Q14863 301 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 ZRSR2Q15696 482 aaKnown RBP13.69□□□□□ -0.22
CPSF1-201ENST00000526271 CCDC38Q502W7 563 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 ODF2Q5BJF6 829 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 PRAMEF13Q5VWM6 474 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 TLDC1Q6P9B6 456 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 PACS1Q6VY07 963 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 RAD9BQ6WBX8 426 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 ZNF534Q76KX8 674 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 TAS2R42Q7RTR8 314 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 OVCH1Q7RTY7 1134 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 SPNS2Q8IVW8 549 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 SHISA5Q8N114 240 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 ZADH2Q8N4Q0 377 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 METTL27Q8N6F8 245 aaPredicted RBP13.69□□□□□ -0.22
CPSF1-201ENST00000526271 HEXDCQ8WVB3 486 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 PSMF1Q92530 271 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.69□□□□□ -0.22
CPSF1-201ENST00000526271 ZNF778Q96MU6 729 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 TAAR6Q96RI8 345 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 AP1M1Q9BXS5 423 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 SLC26A1Q9H2B4 701 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 OR6C2Q9NZP2 312 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 SLC2A6Q9UGQ3 507 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 NDOR1Q9UHB4 597 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 G3BP2Q9UN86 482 aaKnown RBP13.69□□□□□ -0.22
CPSF1-201ENST00000526271 PLCL2Q9UPR0 1127 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 OSGIN2Q9Y236 505 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 R3HDM2Q9Y2K5 976 aaKnown RBP13.69□□□□□ -0.22
CPSF1-201ENST00000526271 PCDHA3Q9Y5H8 950 aa13.69□□□□□ -0.22
CPSF1-201ENST00000526271 EPN1Q9Y6I3 576 aaPredicted RBP13.69□□□□□ -0.22
CPSF1-201ENST00000526271 ZFHX3Q15911 3703 aa13.68□□□□□ -0.22
CPSF1-201ENST00000526271 NCOA6Q14686 2063 aaPredicted RBP13.68□□□□□ -0.22
CPSF1-201ENST00000526271 TCRBV7S2A1N4TA0A589 114 aa13.68□□□□□ -0.22
CPSF1-201ENST00000526271 SOWAHDA6NJG2 315 aa13.68□□□□□ -0.22
CPSF1-201ENST00000526271 IQCF5A8MTL0 148 aa13.68□□□□□ -0.22
CPSF1-201ENST00000526271 PEX12O00623 359 aa13.68□□□□□ -0.22
CPSF1-201ENST00000526271 CTSVO60911 334 aa13.68□□□□□ -0.22
CPSF1-201ENST00000526271 AP2A2O94973 939 aa13.68□□□□□ -0.22
CPSF1-201ENST00000526271 AP2A1O95782 977 aa13.68□□□□□ -0.22
CPSF1-201ENST00000526271 ITGA3P26006 1051 aa13.68□□□□□ -0.22
CPSF1-201ENST00000526271 CYLC1P35663 651 aaPredicted RBP13.68□□□□□ -0.22
CPSF1-201ENST00000526271 TSFMP43897 325 aaKnown RBP13.68□□□□□ -0.22
CPSF1-201ENST00000526271 OR1D4P47884 311 aa13.68□□□□□ -0.22
CPSF1-201ENST00000526271 CSE1LP55060 971 aaKnown RBP13.68□□□□□ -0.22
CPSF1-201ENST00000526271 AIMP2Q13155 320 aaKnown RBP13.68□□□□□ -0.22
CPSF1-201ENST00000526271 CCSMST1Q4G0I0 132 aa13.68□□□□□ -0.22
CPSF1-201ENST00000526271 TTLL10Q6ZVT0 673 aa13.68□□□□□ -0.22
CPSF1-201ENST00000526271 TAX1BP1Q86VP1 789 aa13.68□□□□□ -0.22
CPSF1-201ENST00000526271 MCATQ8IVS2 390 aaKnown RBP13.68□□□□□ -0.22
CPSF1-201ENST00000526271 CDKL3Q8IVW4 592 aaPredicted RBP13.68□□□□□ -0.22
CPSF1-201ENST00000526271 PARP9Q8IXQ6 854 aa13.68□□□□□ -0.22
CPSF1-201ENST00000526271 OR11G2Q8NGC1 345 aa13.68□□□□□ -0.22
CPSF1-201ENST00000526271 FAR1Q8WVX9 515 aa13.68□□□□□ -0.22
CPSF1-201ENST00000526271 ELMO1Q92556 727 aa13.68□□□□□ -0.22
CPSF1-201ENST00000526271 TRIM56Q9BRZ2 755 aaKnown RBP13.68□□□□□ -0.22
CPSF1-201ENST00000526271 SOX17Q9H6I2 414 aaPredicted RBP13.68□□□□□ -0.22
CPSF1-201ENST00000526271 STOX2Q9P2F5 926 aaPredicted RBP13.68□□□□□ -0.22
CPSF1-201ENST00000526271 GPN3Q9UHW5 284 aaPredicted RBP13.68□□□□□ -0.22
CPSF1-201ENST00000526271 SRPK3Q9UPE1 567 aa13.68□□□□□ -0.22
CPSF1-201ENST00000526271 PCDHA13Q9Y5I0 950 aa13.68□□□□□ -0.22
CPSF1-201ENST00000526271 ARHGAP10A1A4S6 786 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms