RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 SHMT2P34897 504 aa11.14□□□□□ -0.63
SDCBP-211ENST00000523441 NSG1P42857 185 aa11.14□□□□□ -0.63
SDCBP-211ENST00000523441 KLC1Q07866 573 aa11.14□□□□□ -0.63
SDCBP-211ENST00000523441 STX1AQ16623 288 aa11.14□□□□□ -0.63
SDCBP-211ENST00000523441 FILIP1LQ4L180 1135 aa11.14□□□□□ -0.63
SDCBP-211ENST00000523441 SLC9A4Q6AI14 798 aa11.14□□□□□ -0.63
SDCBP-211ENST00000523441 RPUSD3Q6P087 351 aaKnown RBP11.14□□□□□ -0.63
SDCBP-211ENST00000523441 CNSTQ6PJW8 725 aa11.14□□□□□ -0.63
SDCBP-211ENST00000523441 CCDC50Q8IVM0 306 aa11.14□□□□□ -0.63
SDCBP-211ENST00000523441 SUN3Q8TAQ9 357 aa11.14□□□□□ -0.63
SDCBP-211ENST00000523441 TFB1MQ8WVM0 346 aaKnown RBP11.14□□□□□ -0.63
SDCBP-211ENST00000523441 NRGNQ92686 78 aa11.14□□□□□ -0.63
SDCBP-211ENST00000523441 FKBP10Q96AY3 582 aa11.14□□□□□ -0.63
SDCBP-211ENST00000523441 VPS50Q96JG6 964 aa11.14□□□□□ -0.63
SDCBP-211ENST00000523441 MAGED4Q96JG8 741 aa11.14□□□□□ -0.63
SDCBP-211ENST00000523441 LINC00615Q96LM1 132 aaPredicted RBP11.14□□□□□ -0.63
SDCBP-211ENST00000523441 OLFM3Q96PB7 478 aa11.14□□□□□ -0.63
SDCBP-211ENST00000523441 PACSIN1Q9BY11 444 aa11.14□□□□□ -0.63
SDCBP-211ENST00000523441 MRM3Q9HC36 420 aaKnown RBP11.14□□□□□ -0.63
SDCBP-211ENST00000523441 ANO10Q9NW15 660 aa11.14□□□□□ -0.63
SDCBP-211ENST00000523441 RSPH14Q9UHP6 348 aa11.14□□□□□ -0.63
SDCBP-211ENST00000523441 C3orf18Q9UK00 162 aa11.14□□□□□ -0.63
SDCBP-211ENST00000523441 KLHL33A6NCF5 533 aa11.13□□□□□ -0.63
SDCBP-211ENST00000523441 LRRC10BA6NIK2 292 aa11.13□□□□□ -0.63
SDCBP-211ENST00000523441 HPP00738 406 aa11.13□□□□□ -0.63
SDCBP-211ENST00000523441 CRYABP02511 175 aaKnown RBP11.13□□□□□ -0.63
SDCBP-211ENST00000523441 EIF2S1P05198 315 aaKnown RBP11.13□□□□□ -0.63
SDCBP-211ENST00000523441 PRR35P0CG20 571 aa11.13□□□□□ -0.63
SDCBP-211ENST00000523441 CD99P14209 185 aa11.13□□□□□ -0.63
SDCBP-211ENST00000523441 PECAM1P16284 738 aaPredicted RBP11.13□□□□□ -0.63
SDCBP-211ENST00000523441 HOXB4P17483 251 aaPredicted RBP11.13□□□□□ -0.63
SDCBP-211ENST00000523441 ITGALP20701 1170 aa11.13□□□□□ -0.63
SDCBP-211ENST00000523441 CAPN3P20807 821 aa11.13□□□□□ -0.63
SDCBP-211ENST00000523441 ARSFP54793 590 aa11.13□□□□□ -0.63
SDCBP-211ENST00000523441 CSNK1G2P78368 415 aa11.13□□□□□ -0.63
SDCBP-211ENST00000523441 FANCCQ00597 558 aa11.13□□□□□ -0.63
SDCBP-211ENST00000523441 WASHC5Q12768 1159 aa11.13□□□□□ -0.63
SDCBP-211ENST00000523441 SLC14A2Q15849 920 aa11.13□□□□□ -0.63
SDCBP-211ENST00000523441 SLC5A12Q1EHB4 618 aa11.13□□□□□ -0.63
SDCBP-211ENST00000523441 ALKBH5Q6P6C2 394 aaKnown RBP11.13□□□□□ -0.63
SDCBP-211ENST00000523441 ZNF567Q8N184 647 aa11.13□□□□□ -0.63
SDCBP-211ENST00000523441 TTC29Q8NA56 475 aaPredicted RBP11.13□□□□□ -0.63
SDCBP-211ENST00000523441 CFAP61Q8NHU2 1237 aa11.13□□□□□ -0.63
SDCBP-211ENST00000523441 FLVCR1-AS1Q8TAF5 88 aa11.13□□□□□ -0.63
SDCBP-211ENST00000523441 MIEF2Q96C03 454 aa11.13□□□□□ -0.63
SDCBP-211ENST00000523441 TRIM56Q9BRZ2 755 aaKnown RBP11.13□□□□□ -0.63
SDCBP-211ENST00000523441 C10orf88Q9H8K7 445 aa11.13□□□□□ -0.63
SDCBP-211ENST00000523441 WDR54Q9H977 334 aa11.13□□□□□ -0.63
SDCBP-211ENST00000523441 MCCC2Q9HCC0 563 aa11.13□□□□□ -0.63
SDCBP-211ENST00000523441 CHMP5Q9NZZ3 219 aa11.13□□□□□ -0.63
SDCBP-211ENST00000523441 MRPS2Q9Y399 296 aaKnown RBP11.13□□□□□ -0.63
SDCBP-211ENST00000523441 HYOU1Q9Y4L1 999 aa11.13□□□□□ -0.63
SDCBP-211ENST00000523441 A8MUI8 341 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 USP1O94782 785 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 ALBP02768 609 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 TPBGLP0DKB5 382 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 CD1EP15812 388 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 MC4RP32245 332 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 VSX2P58304 361 aaPredicted RBP11.12□□□□□ -0.63
SDCBP-211ENST00000523441 XIAPP98170 497 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 OCA2Q04671 838 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 ZNF33BQ06732 778 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 TAF1AQ15573 450 aaPredicted RBP11.12□□□□□ -0.63
SDCBP-211ENST00000523441 SYTL3Q4VX76 610 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 HIBCHQ6NVY1 386 aaPredicted RBP11.12□□□□□ -0.63
SDCBP-211ENST00000523441 NEK10Q6ZWH5 1172 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 NLRP9Q7RTR0 991 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 LAPTM4BQ86VI4 370 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 TMEM200AQ86VY9 491 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 SERPINA9Q86WD7 417 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.12□□□□□ -0.63
SDCBP-211ENST00000523441 STT3BQ8TCJ2 826 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 DTX3LQ8TDB6 740 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 ADAMTS18Q8TE60 1221 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 PSMF1Q92530 271 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 ELMO1Q92556 727 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 ULK4Q96C45 1275 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 NAP1L5Q96NT1 182 aaPredicted RBP11.12□□□□□ -0.63
SDCBP-211ENST00000523441 IL17FQ96PD4 163 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 SELENOSQ9BQE4 189 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 VPS37BQ9H9H4 285 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 KLHL1Q9NR64 748 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 SMARCAL1Q9NZC9 954 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 ABI3Q9P2A4 366 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 IMPACTQ9P2X3 320 aa11.12□□□□□ -0.63
SDCBP-211ENST00000523441 LUC7L2Q9Y383 392 aaKnown RBP11.12□□□□□ -0.63
SDCBP-211ENST00000523441 ANKHD1Q8IWZ3 2542 aaKnown RBP11.12□□□□□ -0.63
SDCBP-211ENST00000523441 C3orf70A6NLC5 250 aaPredicted RBP11.11□□□□□ -0.63
SDCBP-211ENST00000523441 MED26O95402 600 aa11.11□□□□□ -0.63
SDCBP-211ENST00000523441 SERPING1P05155 500 aa11.11□□□□□ -0.63
SDCBP-211ENST00000523441 ZGLP1P0C6A0 271 aa11.11□□□□□ -0.63
SDCBP-211ENST00000523441 ITGAMP11215 1152 aa11.11□□□□□ -0.63
SDCBP-211ENST00000523441 COX6A1P12074 109 aa11.11□□□□□ -0.63
SDCBP-211ENST00000523441 ZFXP17010 805 aaPredicted RBP11.11□□□□□ -0.63
SDCBP-211ENST00000523441 CXCR2P25025 360 aa11.11□□□□□ -0.63
SDCBP-211ENST00000523441 ARHGAP25P42331 645 aa11.11□□□□□ -0.63
SDCBP-211ENST00000523441 CD151P48509 253 aa11.11□□□□□ -0.63
SDCBP-211ENST00000523441 RAB28P51157 221 aa11.11□□□□□ -0.63
SDCBP-211ENST00000523441 MPP3Q13368 585 aa11.11□□□□□ -0.63
SDCBP-211ENST00000523441 SPARCL1Q14515 664 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms