RNA–Protein interactions for RNA: ENST00000509576.5

DDX41-210, Transcript of DEAD-box helicase 41, human

TSL 3

Gene DDX41, Length 819 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX41-210	ENST00000509576	KLF1	Q13351	362 aa	Predicted RBP	12.84	□□□□□ -0.35
DDX41-210	ENST00000509576	NKG7	Q16617	165 aa		12.84	□□□□□ -0.35
DDX41-210	ENST00000509576	SLC5A12	Q1EHB4	618 aa		12.84	□□□□□ -0.35
DDX41-210	ENST00000509576	CCSMST1	Q4G0I0	132 aa		12.84	□□□□□ -0.35
DDX41-210	ENST00000509576	PRUNE1	Q86TP1	453 aa		12.84	□□□□□ -0.35
DDX41-210	ENST00000509576	TAX1BP1	Q86VP1	789 aa		12.84	□□□□□ -0.35
DDX41-210	ENST00000509576	CNGA4	Q8IV77	575 aa		12.84	□□□□□ -0.35
DDX41-210	ENST00000509576	SHISA5	Q8N114	240 aa		12.84	□□□□□ -0.35
DDX41-210	ENST00000509576	METTL27	Q8N6F8	245 aa	Predicted RBP	12.84	□□□□□ -0.35
DDX41-210	ENST00000509576	CLEC1A	Q8NC01	280 aa		12.84	□□□□□ -0.35
DDX41-210	ENST00000509576	STYX	Q8WUJ0	223 aa		12.84	□□□□□ -0.35
DDX41-210	ENST00000509576	PTER	Q96BW5	349 aa		12.84	□□□□□ -0.35
DDX41-210	ENST00000509576	FER1L6-AS2	Q96M78	137 aa		12.84	□□□□□ -0.35
DDX41-210	ENST00000509576	ZNF285	Q96NJ3	590 aa		12.84	□□□□□ -0.35
DDX41-210	ENST00000509576	STOX2	Q9P2F5	926 aa	Predicted RBP	12.84	□□□□□ -0.35
DDX41-210	ENST00000509576	PACSIN2	Q9UNF0	486 aa	Predicted RBP	12.84	□□□□□ -0.35
DDX41-210	ENST00000509576	COPG1	Q9Y678	874 aa	Known RBP	12.84	□□□□□ -0.35
DDX41-210	ENST00000509576	AP1M2	Q9Y6Q5	423 aa		12.84	□□□□□ -0.35
DDX41-210	ENST00000509576	SCN2A	Q99250	2005 aa		12.84	□□□□□ -0.35
DDX41-210	ENST00000509576	WISP2	O76076	250 aa		12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	KLHL18	O94889	574 aa		12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	AP2A2	O94973	939 aa		12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	AP2A1	O95782	977 aa		12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	TPM3	P06753	285 aa		12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	POU3F2	P20265	443 aa	Predicted RBP	12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	PSMB5	P28074	263 aa		12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	NSG1	P42857	185 aa		12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	GLRB	P48167	497 aa		12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	SRSF11	Q05519	484 aa	Known RBP	12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	PRPSAP1	Q14558	356 aa		12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	ITIH4	Q14624	930 aa		12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	KCTD19	Q17RG1	926 aa	Predicted RBP	12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	RAD9B	Q6WBX8	426 aa		12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	LDB1	Q86U70	411 aa	Predicted RBP	12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	ST6GALNAC3	Q8NDV1	305 aa		12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	OR52K1	Q8NGK4	314 aa		12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	SLC35B2	Q8TB61	432 aa		12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	GRHL3	Q8TE85	626 aa		12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	C5orf34	Q96MH7	638 aa		12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	IP6K3	Q96PC2	410 aa		12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	WDR77	Q9BQA1	342 aa	Predicted RBP	12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	AP1M1	Q9BXS5	423 aa		12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	ILKAP	Q9H0C8	392 aa	Predicted RBP	12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	OR6C2	Q9NZP2	312 aa		12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	MARCH4	Q9P2E8	410 aa	Predicted RBP	12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	NDOR1	Q9UHB4	597 aa		12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	PLCL2	Q9UPR0	1127 aa		12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	NCOA6	Q14686	2063 aa	Predicted RBP	12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	PKDREJ	Q9NTG1	2253 aa		12.83	□□□□□ -0.36
DDX41-210	ENST00000509576	ISM1	B1AKI9	464 aa		12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	GPC4	O75487	556 aa		12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	GOT2	P00505	430 aa	Known RBP	12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	MMP11	P24347	488 aa		12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	OR1D4	P47884	311 aa		12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	PARP6	Q2NL67	630 aa		12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	CCDC181	Q5TID7	509 aa		12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	PRAMEF13	Q5VWM6	474 aa		12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	LYPLAL1	Q5VWZ2	237 aa		12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	FRMPD2B	Q6IN97	320 aa		12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	TLDC1	Q6P9B6	456 aa		12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	TTLL10	Q6ZVT0	673 aa		12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	OVCH1	Q7RTY7	1134 aa		12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	MCAT	Q8IVS2	390 aa	Known RBP	12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	PARP9	Q8IXQ6	854 aa		12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	SLC22A15	Q8IZD6	547 aa		12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	KRT222	Q8N1A0	295 aa		12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	CATSPER1	Q8NEC5	780 aa		12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	OR11G2	Q8NGC1	345 aa		12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	TMEM121	Q9BTD3	319 aa		12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	SOX17	Q9H6I2	414 aa	Predicted RBP	12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	ATP13A2	Q9NQ11	1180 aa		12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	ENAM	Q9NRM1	1142 aa		12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	GPN3	Q9UHW5	284 aa	Predicted RBP	12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	FEZ2	Q9UHY8	353 aa	Predicted RBP	12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	SRPK3	Q9UPE1	567 aa		12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	RUVBL2	Q9Y230	463 aa	Known RBP	12.82	□□□□□ -0.36
DDX41-210	ENST00000509576	ANKRD17	O75179	2603 aa	Known RBP	12.81	□□□□□ -0.36
DDX41-210	ENST00000509576		A0A1B0GX78	115 aa		12.81	□□□□□ -0.36
DDX41-210	ENST00000509576		A0A1W2PPV9	198 aa		12.81	□□□□□ -0.36
DDX41-210	ENST00000509576	VSTM2B	A6NLU5	285 aa		12.81	□□□□□ -0.36
DDX41-210	ENST00000509576	PEX12	O00623	359 aa		12.81	□□□□□ -0.36
DDX41-210	ENST00000509576	LRRTM2	O43300	516 aa		12.81	□□□□□ -0.36
DDX41-210	ENST00000509576	ZG16	O60844	167 aa		12.81	□□□□□ -0.36
DDX41-210	ENST00000509576	GSTM1	P09488	218 aa		12.81	□□□□□ -0.36
DDX41-210	ENST00000509576	ITGA3	P26006	1051 aa		12.81	□□□□□ -0.36
DDX41-210	ENST00000509576	VARS	P26640	1264 aa	Known RBP	12.81	□□□□□ -0.36
DDX41-210	ENST00000509576	GSTM4	Q03013	218 aa		12.81	□□□□□ -0.36
DDX41-210	ENST00000509576	ACVR1	Q04771	509 aa		12.81	□□□□□ -0.36
DDX41-210	ENST00000509576	AIMP2	Q13155	320 aa	Known RBP	12.81	□□□□□ -0.36
DDX41-210	ENST00000509576	KIR2DS3	Q14952	304 aa		12.81	□□□□□ -0.36
DDX41-210	ENST00000509576	CYP2A13	Q16696	494 aa		12.81	□□□□□ -0.36
DDX41-210	ENST00000509576	ZADH2	Q8N4Q0	377 aa		12.81	□□□□□ -0.36
DDX41-210	ENST00000509576	ACRBP	Q8NEB7	543 aa		12.81	□□□□□ -0.36
DDX41-210	ENST00000509576	DENND1A	Q8TEH3	1009 aa		12.81	□□□□□ -0.36
DDX41-210	ENST00000509576	PPP4R1	Q8TF05	950 aa		12.81	□□□□□ -0.36
DDX41-210	ENST00000509576	ATG4A	Q8WYN0	398 aa		12.81	□□□□□ -0.36
DDX41-210	ENST00000509576	PSMF1	Q92530	271 aa		12.81	□□□□□ -0.36
DDX41-210	ENST00000509576	HDAC10	Q969S8	669 aa		12.81	□□□□□ -0.36
DDX41-210	ENST00000509576	FKBP10	Q96AY3	582 aa		12.81	□□□□□ -0.36

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