RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ANKRD42Q8N9B4 389 aa2.14□□□□□ -2.07
NUP54-208ENST00000508604 POC5Q8NA72 575 aa2.14□□□□□ -2.07
NUP54-208ENST00000508604 OR13J1Q8NGT2 312 aa2.14□□□□□ -2.07
NUP54-208ENST00000508604 ARHGEF2Q92974 986 aaKnown RBP2.14□□□□□ -2.07
NUP54-208ENST00000508604 ELMOD3Q96FG2 381 aa2.14□□□□□ -2.07
NUP54-208ENST00000508604 SCLT1Q96NL6 688 aa2.14□□□□□ -2.07
NUP54-208ENST00000508604 ATF6BQ99941 703 aa2.14□□□□□ -2.07
NUP54-208ENST00000508604 CHMP1AQ9HD42 196 aaPredicted RBP2.14□□□□□ -2.07
NUP54-208ENST00000508604 GGA3Q9NZ52 723 aa2.14□□□□□ -2.07
NUP54-208ENST00000508604 SLC6A5Q9Y345 797 aa2.14□□□□□ -2.07
NUP54-208ENST00000508604 CLSPNQ9HAW4 1339 aa2.14□□□□□ -2.07
NUP54-208ENST00000508604 A0A1W2PPH5 198 aa2.13□□□□□ -2.07
NUP54-208ENST00000508604 ZNF840PA6NDX5 716 aa2.13□□□□□ -2.07
NUP54-208ENST00000508604 RRN3P2A6NIE6 340 aa2.13□□□□□ -2.07
NUP54-208ENST00000508604 PIP5K1CO60331 668 aa2.13□□□□□ -2.07
NUP54-208ENST00000508604 EIF2S1P05198 315 aaKnown RBP2.13□□□□□ -2.07
NUP54-208ENST00000508604 SRPRAP08240 638 aaKnown RBP2.13□□□□□ -2.07
NUP54-208ENST00000508604 CDH3P22223 829 aa2.13□□□□□ -2.07
NUP54-208ENST00000508604 MELKQ14680 651 aa2.13□□□□□ -2.07
NUP54-208ENST00000508604 MTF1Q14872 753 aa2.13□□□□□ -2.07
NUP54-208ENST00000508604 SLC25A53Q5H9E4 307 aa2.13□□□□□ -2.07
NUP54-208ENST00000508604 ACAD10Q6JQN1 1059 aa2.13□□□□□ -2.07
NUP54-208ENST00000508604 CATSPERDQ86XM0 798 aa2.13□□□□□ -2.07
NUP54-208ENST00000508604 TEX11Q8IYF3 940 aa2.13□□□□□ -2.07
NUP54-208ENST00000508604 AFAP1Q8N556 730 aa2.13□□□□□ -2.07
NUP54-208ENST00000508604 CD177Q8N6Q3 437 aa2.13□□□□□ -2.07
NUP54-208ENST00000508604 OR1L3Q8NH93 324 aa2.13□□□□□ -2.07
NUP54-208ENST00000508604 POMGNT1Q8WZA1 660 aa2.13□□□□□ -2.07
NUP54-208ENST00000508604 ZNF597Q96LX8 424 aa2.13□□□□□ -2.07
NUP54-208ENST00000508604 OR2B2Q9GZK3 357 aa2.13□□□□□ -2.07
NUP54-208ENST00000508604 HOXD1Q9GZZ0 328 aa2.13□□□□□ -2.07
NUP54-208ENST00000508604 SETD4Q9NVD3 440 aa2.13□□□□□ -2.07
NUP54-208ENST00000508604 MTUS1Q9ULD2 1270 aa2.13□□□□□ -2.07
NUP54-208ENST00000508604 GRIP1Q9Y3R0 1128 aa2.13□□□□□ -2.07
NUP54-208ENST00000508604 CMAHPQ9Y471 501 aa2.13□□□□□ -2.07
NUP54-208ENST00000508604 STYXL1Q9Y6J8 313 aa2.13□□□□□ -2.07
NUP54-208ENST00000508604 A0A087WWV3 80 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 FAM220BPB1ANY3 271 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 H0YAE9 185 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 TPD52L2O43399 206 aaKnown RBP2.12□□□□□ -2.07
NUP54-208ENST00000508604 LRCH4O75427 683 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 LBX1P52954 281 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 NDPQ00604 133 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 OR4N5Q8IXE1 308 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 DIS3L2Q8IYB7 885 aaKnown RBP2.12□□□□□ -2.07
NUP54-208ENST00000508604 C11orf45Q8TAV5 145 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 ERLEC1Q96DZ1 483 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 SPAG5Q96R06 1193 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 NYXQ9GZU5 481 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 ZNF701Q9NV72 531 aaPredicted RBP2.12□□□□□ -2.07
NUP54-208ENST00000508604 RRN3Q9NYV6 651 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 IGHV4-30-2A0A087WSY4 118 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 SRRM4A7MD48 611 aaKnown RBP2.12□□□□□ -2.07
NUP54-208ENST00000508604 LY6G6DO95868 133 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 TRUB2O95900 331 aaKnown RBP2.12□□□□□ -2.07
NUP54-208ENST00000508604 CDH2P19022 906 aaPredicted RBP2.12□□□□□ -2.07
NUP54-208ENST00000508604 ETV5P41161 510 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 CLCN4P51793 760 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 CSNK2BP67870 215 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 ODF4Q2M2E3 257 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 SARM1Q6SZW1 724 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 R3HCC1LQ7Z5L2 792 aaKnown RBP2.12□□□□□ -2.07
NUP54-208ENST00000508604 PHC2Q8IXK0 858 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 SCYL3Q8IZE3 742 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 PAPD5Q8NDF8 572 aaKnown RBP2.12□□□□□ -2.07
NUP54-208ENST00000508604 OR5T2Q8NGG2 359 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 MOSPD2Q8NHP6 518 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 C9orf43Q8TAL5 461 aaPredicted RBP2.12□□□□□ -2.07
NUP54-208ENST00000508604 ZUFSPQ96AP4 578 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 OR6C1Q96RD1 312 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 BTBD10Q9BSF8 475 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 UBAC1Q9BSL1 405 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 LMF2Q9BU23 707 aaKnown RBP2.12□□□□□ -2.07
NUP54-208ENST00000508604 PLK3Q9H4B4 646 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 WASH6PQ9NQA3 447 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 FAM207AQ9NSI2 230 aaPredicted RBP2.12□□□□□ -2.07
NUP54-208ENST00000508604 TAS2R14Q9NYV8 317 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 RHCGQ9UBD6 479 aa2.12□□□□□ -2.07
NUP54-208ENST00000508604 UMODL1Q5DID0 1318 aa2.11□□□□□ -2.07
NUP54-208ENST00000508604 IFRD1O00458 451 aaPredicted RBP2.11□□□□□ -2.07
NUP54-208ENST00000508604 OGTO15294 1046 aa2.11□□□□□ -2.07
NUP54-208ENST00000508604 RSL1D1O76021 490 aaKnown RBP2.11□□□□□ -2.07
NUP54-208ENST00000508604 XGP55808 180 aa2.11□□□□□ -2.07
NUP54-208ENST00000508604 IKQ13123 557 aaPredicted RBP2.11□□□□□ -2.07
NUP54-208ENST00000508604 ZNF74Q16587 644 aa2.11□□□□□ -2.07
NUP54-208ENST00000508604 ELFN2Q5R3F8 820 aa2.11□□□□□ -2.07
NUP54-208ENST00000508604 RNLSQ5VYX0 342 aa2.11□□□□□ -2.07
NUP54-208ENST00000508604 TIPARPQ7Z3E1 657 aaKnown RBP2.11□□□□□ -2.07
NUP54-208ENST00000508604 PRR22Q8IZ63 422 aa2.11□□□□□ -2.07
NUP54-208ENST00000508604 APOBEC4Q8WW27 367 aaKnown RBP2.11□□□□□ -2.07
NUP54-208ENST00000508604 OR2A14Q96R47 310 aa2.11□□□□□ -2.07
NUP54-208ENST00000508604 MAP3K3Q99759 626 aa2.11□□□□□ -2.07
NUP54-208ENST00000508604 FNDC11Q9BVV2 318 aa2.11□□□□□ -2.07
NUP54-208ENST00000508604 PANK2Q9BZ23 570 aa2.11□□□□□ -2.07
NUP54-208ENST00000508604 THAP2Q9H0W7 228 aa2.11□□□□□ -2.07
NUP54-208ENST00000508604 SH2D4AQ9H788 454 aa2.11□□□□□ -2.07
NUP54-208ENST00000508604 ZHX1Q9UKY1 873 aaPredicted RBP2.11□□□□□ -2.07
NUP54-208ENST00000508604 DGKBQ9Y6T7 804 aa2.11□□□□□ -2.07
NUP54-208ENST00000508604 C2orf81A6NN90 581 aa2.1□□□□□ -2.07
NUP54-208ENST00000508604 ENO4A6NNW6 628 aa2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms