RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 NCBP2-AS2Q69YL0 99 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 DEFB119Q8N690 84 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 CNTD1Q8N815 330 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 ZNF781Q8N8C0 355 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 C1GALT1C1Q96EU7 318 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 TWNKQ96RR1 684 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 GATA5Q9BWX5 397 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-215ENST00000496447 ALG2Q9H553 416 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 AFDNP55196 1824 aaKnown RBP12.88□□□□□ -0.35
PTPRF-215ENST00000496447 IRS2Q9Y4H2 1338 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 A8MU76 341 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 DNAJA2O60884 412 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 MPIP34949 423 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 DNASE1L1P49184 302 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 SIM2Q14190 667 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-215ENST00000496447 HFE2Q6ZVN8 426 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 CLCC1Q96S66 551 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 SMG9Q9H0W8 520 aaKnown RBP12.88□□□□□ -0.35
PTPRF-215ENST00000496447 BCAS3Q9H6U6 928 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 A8MUA0 341 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 J3KR12 359 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 NIPSNAP2O75323 286 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 YAP1P46937 504 aaKnown RBP12.88□□□□□ -0.35
PTPRF-215ENST00000496447 SGCBQ16585 318 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 OSTM1Q86WC4 334 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 DUSP26Q9BV47 211 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 ZNF282Q9UDV7 671 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-215ENST00000496447 A0A1W2PQ72 361 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 FADS2O95864 444 aaKnown RBP12.88□□□□□ -0.35
PTPRF-215ENST00000496447 ATP1B2P14415 290 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-215ENST00000496447 ITPRIPL2Q3MIP1 535 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 NDC1Q9BTX1 674 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 SLC2A4RGQ9NR83 387 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 IFT80Q9P2H3 777 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-215ENST00000496447 LRRC42Q9Y546 428 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 OAS3Q9Y6K5 1087 aaKnown RBP12.88□□□□□ -0.35
PTPRF-215ENST00000496447 ADAMDEC1O15204 470 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 TCEA3O75764 348 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 PLGP00747 810 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-215ENST00000496447 ZNF30P17039 623 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 CDH12P55289 794 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 OLR1P78380 273 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 HKDC1Q2TB90 917 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 C6orf183Q5T699 404 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 FRRS1Q6ZNA5 592 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 ZNF433Q8N7K0 673 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-215ENST00000496447 CAMKVQ8NCB2 501 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 RBM15BQ8NDT2 890 aaKnown RBP12.87□□□□□ -0.35
PTPRF-215ENST00000496447 RELTQ969Z4 430 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 EFHD2Q96C19 240 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-215ENST00000496447 SAMD11Q96NU1 681 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 IL1RAPQ9NPH3 570 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 BAIAP2Q9UQB8 552 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 NFKB2Q00653 900 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 PLGLB1Q02325 96 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 C22orf39Q6P5X5 142 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 PGAM4Q8N0Y7 254 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 IGSF21Q96ID5 467 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 DGAT2Q96PD7 388 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 EFCAB11Q9BUY7 163 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 C12orf4Q9NQ89 552 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 CFAP20Q9Y6A4 193 aaKnown RBP12.87□□□□□ -0.35
PTPRF-215ENST00000496447 BCKDKO14874 412 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 PRODHO43272 600 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 NME6O75414 186 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-215ENST00000496447 CCNB2O95067 398 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 ALPPP05187 535 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 PIM1P11309 404 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-215ENST00000496447 NRLP54845 237 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 PHC1P78364 1004 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 AAK1Q2M2I8 961 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 NIPAL1Q6NVV3 410 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 GLB1L3Q8NCI6 653 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-215ENST00000496447 OR10A6Q8NH74 314 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 PYCR2Q96C36 320 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 ART5Q96L15 291 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 CADM1Q9BY67 442 aaKnown RBP12.87□□□□□ -0.35
PTPRF-215ENST00000496447 SALL4Q9UJQ4 1053 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 NDUFS4O43181 175 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 TPST2O60704 377 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 PRKAR1AP10644 381 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 CSTF2P33240 577 aaKnown RBP eCLIP12.87□□□□□ -0.35
PTPRF-215ENST00000496447 RBBP4Q09028 425 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 FAM174BQ3ZCQ3 159 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 KLHDC10Q6PID8 442 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 FAM110BQ8TC76 370 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 LPGAT1Q92604 370 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 KXD1Q9BQD3 176 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 TBL1XR1Q9BZK7 514 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 CXorf21Q9HAI6 301 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 REM1O75628 298 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 RSL1D1O76021 490 aaKnown RBP12.87□□□□□ -0.35
PTPRF-215ENST00000496447 CLDN7O95471 211 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 ZNF823P16415 610 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 NELFEP18615 380 aaKnown RBP12.87□□□□□ -0.35
PTPRF-215ENST00000496447 TGFBR2P37173 567 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 NPY5RQ15761 445 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 TNFAIP8L2Q6P589 184 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-215ENST00000496447 PAQR3Q6TCH7 311 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 GPR65Q8IYL9 337 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms