RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 SPATA4Q8NEY3 305 aa17.49■□□□□ 0.39
COL9A3-214ENST00000490398 OR2L8Q8NGY9 312 aa17.49■□□□□ 0.39
COL9A3-214ENST00000490398 CFAP36Q96G28 342 aa17.49■□□□□ 0.39
COL9A3-214ENST00000490398 NDNQ99608 321 aa17.49■□□□□ 0.39
COL9A3-214ENST00000490398 LHX9Q9NQ69 397 aa17.49■□□□□ 0.39
COL9A3-214ENST00000490398 RNF14Q9UBS8 474 aa17.49■□□□□ 0.39
COL9A3-214ENST00000490398 TEX264Q9Y6I9 313 aa17.49■□□□□ 0.39
COL9A3-214ENST00000490398 ARHGEF33A8MVX0 844 aa17.48■□□□□ 0.39
COL9A3-214ENST00000490398 EFCAB8A8MWE9 144 aa17.48■□□□□ 0.39
COL9A3-214ENST00000490398 H3BMH7 237 aa17.48■□□□□ 0.39
COL9A3-214ENST00000490398 PFDN6O15212 129 aa17.48■□□□□ 0.39
COL9A3-214ENST00000490398 RAD51CO43502 376 aa17.48■□□□□ 0.39
COL9A3-214ENST00000490398 FURINP09958 794 aa17.48■□□□□ 0.39
COL9A3-214ENST00000490398 PSMB5P28074 263 aa17.48■□□□□ 0.39
COL9A3-214ENST00000490398 FASTKQ14296 549 aaKnown RBP17.48■□□□□ 0.39
COL9A3-214ENST00000490398 KIR2DS3Q14952 304 aa17.48■□□□□ 0.39
COL9A3-214ENST00000490398 SLC5A12Q1EHB4 618 aa17.48■□□□□ 0.39
COL9A3-214ENST00000490398 CYHR1Q6ZMK1 362 aa17.48■□□□□ 0.39
COL9A3-214ENST00000490398 BPHLQ86WA6 291 aaPredicted RBP17.48■□□□□ 0.39
COL9A3-214ENST00000490398 ZSCAN1Q8NBB4 408 aa17.48■□□□□ 0.39
COL9A3-214ENST00000490398 C2CD4AQ8NCU7 369 aaPredicted RBP17.48■□□□□ 0.39
COL9A3-214ENST00000490398 GSDMBQ8TAX9 411 aa17.48■□□□□ 0.39
COL9A3-214ENST00000490398 STARD8Q92502 1023 aa17.48■□□□□ 0.39
COL9A3-214ENST00000490398 KIAA1143Q96AT1 154 aaPredicted RBP17.48■□□□□ 0.39
COL9A3-214ENST00000490398 SNF8Q96H20 258 aa17.48■□□□□ 0.39
COL9A3-214ENST00000490398 RUNDC3BQ96NL0 473 aa17.48■□□□□ 0.39
COL9A3-214ENST00000490398 FCRL4Q96PJ5 515 aa17.48■□□□□ 0.39
COL9A3-214ENST00000490398 GPR21Q99679 349 aa17.48■□□□□ 0.39
COL9A3-214ENST00000490398 AARSD1Q9BTE6 412 aaKnown RBP17.48■□□□□ 0.39
COL9A3-214ENST00000490398 SPRTNQ9H040 489 aaPredicted RBP17.48■□□□□ 0.39
COL9A3-214ENST00000490398 PADI1Q9ULC6 663 aa17.48■□□□□ 0.39
COL9A3-214ENST00000490398 A0A1W2PPV9 198 aa17.47■□□□□ 0.39
COL9A3-214ENST00000490398 ZNF891A8MT65 544 aaPredicted RBP17.47■□□□□ 0.39
COL9A3-214ENST00000490398 E5RI56 91 aa17.47■□□□□ 0.39
COL9A3-214ENST00000490398 NRP2O60462 931 aa17.47■□□□□ 0.39
COL9A3-214ENST00000490398 KATNA1O75449 491 aa17.47■□□□□ 0.39
COL9A3-214ENST00000490398 AHSGP02765 367 aa17.47■□□□□ 0.39
COL9A3-214ENST00000490398 RPN2P04844 631 aa17.47■□□□□ 0.39
COL9A3-214ENST00000490398 MAGP20916 626 aa17.47■□□□□ 0.39
COL9A3-214ENST00000490398 ATP5DP30049 168 aa17.47■□□□□ 0.39
COL9A3-214ENST00000490398 RPS18P62269 152 aaKnown RBP17.47■□□□□ 0.39
COL9A3-214ENST00000490398 RBM20Q5T481 1227 aaKnown RBP17.47■□□□□ 0.39
COL9A3-214ENST00000490398 FAM69BQ5VUD6 431 aa17.47■□□□□ 0.39
COL9A3-214ENST00000490398 FCRL6Q6DN72 434 aa17.47■□□□□ 0.39
COL9A3-214ENST00000490398 C16orf46Q6P387 395 aa17.47■□□□□ 0.39
COL9A3-214ENST00000490398 LMNTD2Q8IXW0 634 aa17.47■□□□□ 0.39
COL9A3-214ENST00000490398 CPNE9Q8IYJ1 553 aa17.47■□□□□ 0.39
COL9A3-214ENST00000490398 DNAJC22Q8N4W6 341 aa17.47■□□□□ 0.39
COL9A3-214ENST00000490398 CD200R1Q8TD46 325 aa17.47■□□□□ 0.39
COL9A3-214ENST00000490398 RAD51AP1Q96B01 352 aa17.47■□□□□ 0.39
COL9A3-214ENST00000490398 CERS2Q96G23 380 aa17.47■□□□□ 0.39
COL9A3-214ENST00000490398 FAM167BQ9BTA0 163 aa17.47■□□□□ 0.39
COL9A3-214ENST00000490398 DPH5Q9H2P9 285 aa17.47■□□□□ 0.39
COL9A3-214ENST00000490398 PCMTD2Q9NV79 361 aa17.47■□□□□ 0.39
COL9A3-214ENST00000490398 SLC39A10Q9ULF5 831 aa17.47■□□□□ 0.39
COL9A3-214ENST00000490398 VPS9D1Q9Y2B5 631 aa17.47■□□□□ 0.39
COL9A3-214ENST00000490398 CPNE3O75131 537 aaKnown RBP17.46■□□□□ 0.39
COL9A3-214ENST00000490398 PSIP1O75475 530 aaKnown RBP17.46■□□□□ 0.39
COL9A3-214ENST00000490398 FAM87AP0C7U9 286 aa17.46■□□□□ 0.39
COL9A3-214ENST00000490398 CCNYL3P0C7X3 344 aa17.46■□□□□ 0.39
COL9A3-214ENST00000490398 MSL3P1P0C860 447 aa17.46■□□□□ 0.39
COL9A3-214ENST00000490398 SPTBP11277 2137 aa17.46■□□□□ 0.39
COL9A3-214ENST00000490398 TCN2P20062 427 aa17.46■□□□□ 0.39
COL9A3-214ENST00000490398 RORAP35398 523 aa17.46■□□□□ 0.39
COL9A3-214ENST00000490398 CDKN2DP55273 166 aa17.46■□□□□ 0.39
COL9A3-214ENST00000490398 DNASE1L3Q13609 305 aa17.46■□□□□ 0.39
COL9A3-214ENST00000490398 TRADDQ15628 312 aa17.46■□□□□ 0.39
COL9A3-214ENST00000490398 HIF1AQ16665 826 aa17.46■□□□□ 0.39
COL9A3-214ENST00000490398 TEDDM1Q5T9Z0 273 aa17.46■□□□□ 0.39
COL9A3-214ENST00000490398 STEAP4Q687X5 459 aa17.46■□□□□ 0.39
COL9A3-214ENST00000490398 CYB5D1Q6P9G0 228 aa17.46■□□□□ 0.39
COL9A3-214ENST00000490398 PIWIL4Q7Z3Z4 852 aaKnown RBP17.46■□□□□ 0.39
COL9A3-214ENST00000490398 CNTN4Q8IWV2 1026 aa17.46■□□□□ 0.39
COL9A3-214ENST00000490398 PDIK1LQ8N165 341 aa17.46■□□□□ 0.39
COL9A3-214ENST00000490398 LSM14AQ8ND56 463 aaKnown RBP17.46■□□□□ 0.39
COL9A3-214ENST00000490398 OR8K5Q8NH50 307 aa17.46■□□□□ 0.39
COL9A3-214ENST00000490398 KCNJ9Q92806 393 aa17.46■□□□□ 0.39
COL9A3-214ENST00000490398 WBP1Q96G27 269 aa17.46■□□□□ 0.39
COL9A3-214ENST00000490398 TCTN2Q96GX1 697 aa17.46■□□□□ 0.39
COL9A3-214ENST00000490398 CHST8Q9H2A9 424 aa17.46■□□□□ 0.39
COL9A3-214ENST00000490398 ZC3H7BQ9UGR2 993 aaKnown RBP17.46■□□□□ 0.39
COL9A3-214ENST00000490398 DHRS7Q9Y394 339 aa17.46■□□□□ 0.39
COL9A3-214ENST00000490398 PCDHB3Q9Y5E6 796 aa17.46■□□□□ 0.39
COL9A3-214ENST00000490398 ZNF749O43361 778 aa17.45■□□□□ 0.38
COL9A3-214ENST00000490398 TTC4O95801 387 aa17.45■□□□□ 0.38
COL9A3-214ENST00000490398 MCM3P25205 808 aa17.45■□□□□ 0.38
COL9A3-214ENST00000490398 GRIA3P42263 894 aa17.45■□□□□ 0.38
COL9A3-214ENST00000490398 CDC20Q12834 499 aa17.45■□□□□ 0.38
COL9A3-214ENST00000490398 PDIA2Q13087 525 aaKnown RBP17.45■□□□□ 0.38
COL9A3-214ENST00000490398 PTCHD3Q3KNS1 767 aa17.45■□□□□ 0.38
COL9A3-214ENST00000490398 ZNF517Q6ZMY9 492 aaPredicted RBP17.45■□□□□ 0.38
COL9A3-214ENST00000490398 ZNF843Q8N446 348 aa17.45■□□□□ 0.38
COL9A3-214ENST00000490398 CALML6Q8TD86 181 aa17.45■□□□□ 0.38
COL9A3-214ENST00000490398 INPP5DQ92835 1189 aa17.45■□□□□ 0.38
COL9A3-214ENST00000490398 MR1Q95460 341 aa17.45■□□□□ 0.38
COL9A3-214ENST00000490398 PKP4Q99569 1192 aa17.45■□□□□ 0.38
COL9A3-214ENST00000490398 MIPEPQ99797 713 aa17.45■□□□□ 0.38
COL9A3-214ENST00000490398 ACTR5Q9H9F9 607 aaPredicted RBP17.45■□□□□ 0.38
COL9A3-214ENST00000490398 FANCEQ9HB96 536 aa17.45■□□□□ 0.38
COL9A3-214ENST00000490398 GRHL1Q9NZI5 618 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms