RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 ASIC4Q96FT7 647 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 DGCR6LQ9BY27 220 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 KCTD5Q9NXV2 234 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 GPRC5BQ9NZH0 403 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 SCN5AQ14524 2016 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 TRIM64BA6NI03 449 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 UPK3BL1B0FP48 263 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 UPK3BL2E5RIL1 263 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 GFRA2O00451 464 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 NSG1P42857 185 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 PLA2G16P53816 162 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 TMBIM6P55061 237 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 CLDN8P56748 225 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 B4GALNT1Q00973 533 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 LAPTM4AQ15012 233 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 LRRC66Q68CR7 880 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 LAIR2Q6ISS4 152 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 Q6ZNB5 142 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 CALHM3Q86XJ0 350 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 EID3Q8N140 333 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 PJA1Q8NG27 643 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 LZICQ8WZA0 190 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 CNDP2Q96KP4 475 aaKnown RBP17.5■□□□□ 0.39
VIM-206ENST00000487938 CCDC138Q96M89 665 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 CPPED1Q9BRF8 314 aaPredicted RBP17.5■□□□□ 0.39
VIM-206ENST00000487938 KCNH6Q9H252 994 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 DNAAF2Q9NVR5 837 aaKnown RBP17.5■□□□□ 0.39
VIM-206ENST00000487938 ASIC5Q9NY37 505 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 PPT2Q9UMR5 302 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 ERN1O75460 977 aaKnown RBP17.5■□□□□ 0.39
VIM-206ENST00000487938 CYP4F8P98187 520 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 SLC14A1Q13336 389 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 GALNT13Q8IUC8 556 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 RNF168Q8IYW5 571 aaPredicted RBP17.5■□□□□ 0.39
VIM-206ENST00000487938 OR5K1Q8NHB7 308 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 GIPC3Q8TF64 312 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 NRBF2Q96F24 287 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 APIPQ96GX9 242 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 CAPNS2Q96L46 248 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 RDH12Q96NR8 316 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 BEGAINQ9BUH8 593 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 ELOVL6Q9H5J4 265 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 USE1Q9NZ43 259 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 TMEM9Q9P0T7 183 aa17.5■□□□□ 0.39
VIM-206ENST00000487938 WARS2Q9UGM6 360 aaKnown RBP17.5■□□□□ 0.39
VIM-206ENST00000487938 C16orf96A6NNT2 1141 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 FAM220BPB1ANY3 271 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 MITFO75030 526 aaPredicted RBP17.49■□□□□ 0.39
VIM-206ENST00000487938 IGSF6O95976 241 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 RETP07949 1114 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 GSTM2P28161 218 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 NRIP1P48552 1158 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 PTSQ03393 145 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 ZNF829Q3KNS6 432 aaPredicted RBP17.49■□□□□ 0.39
VIM-206ENST00000487938 DOK6Q6PKX4 331 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 Q6ZNX1 250 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 RNF165Q6ZSG1 346 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 GALNT5Q7Z7M9 940 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 DCP2Q8IU60 420 aaKnown RBP17.49■□□□□ 0.39
VIM-206ENST00000487938 VRK3Q8IV63 474 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 PLPP6Q8IY26 295 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 TMEM132CQ8N3T6 1108 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 PYURFQ96I23 114 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 BARD1Q99728 777 aaKnown RBP17.49■□□□□ 0.39
VIM-206ENST00000487938 SLC29A3Q9BZD2 475 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 VNN3Q9NY84 501 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 ZDHHC3Q9NYG2 299 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 LMCD1Q9NZU5 365 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 INTS6Q9UL03 887 aaKnown RBP17.49■□□□□ 0.39
VIM-206ENST00000487938 LAMA2P24043 3122 aaKnown RBP17.49■□□□□ 0.39
VIM-206ENST00000487938 SCN8AQ9UQD0 1980 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 A0A096LPI6 279 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 PQBP1O60828 265 aaKnown RBP17.49■□□□□ 0.39
VIM-206ENST00000487938 SOCS5O75159 536 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 BCL10O95999 233 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 INHBBP09529 407 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 SERPINA4P29622 427 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 BMXP51813 675 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 C21orf59P57076 290 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 ISL1P61371 349 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 DPY19L1Q2PZI1 675 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 TPGS2Q68CL5 300 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 GTF2IRD2BQ6EKJ0 949 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 ZNF551Q7Z340 670 aaPredicted RBP17.49■□□□□ 0.39
VIM-206ENST00000487938 TMCO2Q7Z6W1 182 aaPredicted RBP17.49■□□□□ 0.39
VIM-206ENST00000487938 GTF2IRD2Q86UP8 949 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 BBS7Q8IWZ6 715 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 CBARPQ8N350 705 aaPredicted RBP17.49■□□□□ 0.39
VIM-206ENST00000487938 ZCCHC7Q8N3Z6 543 aaKnown RBP17.49■□□□□ 0.39
VIM-206ENST00000487938 COPS8Q99627 209 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 CCDC90BQ9GZT6 254 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 TBC1D23Q9NUY8 699 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 AASSQ9UDR5 926 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 CD84Q9UIB8 345 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 FBXO10Q9UK96 956 aa17.49■□□□□ 0.39
VIM-206ENST00000487938 J3QRK9 145 aa17.48■□□□□ 0.39
VIM-206ENST00000487938 PER2O15055 1255 aa17.48■□□□□ 0.39
VIM-206ENST00000487938 ZNF682O95780 498 aa17.48■□□□□ 0.39
VIM-206ENST00000487938 LATS1O95835 1130 aa17.48■□□□□ 0.39
VIM-206ENST00000487938 MYCP01106 439 aaPredicted RBP17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms