RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 LDB2O43679 373 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 SGTAO43765 313 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 IPO13O94829 963 aaKnown RBP7.5□□□□□ -1.21
VPS50-204ENST00000438395 OR56A5P0C7T3 313 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 UGT2B7P16662 529 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 TPH1P17752 444 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 MSNP26038 577 aaKnown RBP7.5□□□□□ -1.21
VPS50-204ENST00000438395 ADH6P28332 368 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 PDHA2P29803 388 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 RORAP35398 523 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 PPARGP37231 505 aaPredicted RBP7.5□□□□□ -1.21
VPS50-204ENST00000438395 PSMA6P60900 246 aaKnown RBP7.5□□□□□ -1.21
VPS50-204ENST00000438395 DCDP81605 110 aaKnown RBP7.5□□□□□ -1.21
VPS50-204ENST00000438395 PLOD1Q02809 727 aaPredicted RBP7.5□□□□□ -1.21
VPS50-204ENST00000438395 TBX2Q13207 712 aaPredicted RBP7.5□□□□□ -1.21
VPS50-204ENST00000438395 BRD3Q15059 726 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 TMED2Q15363 201 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 PARP6Q2NL67 630 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 SAMD5Q5TGI4 173 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 C1orf189Q5VU69 101 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 PAPD7Q5XG87 772 aaKnown RBP7.5□□□□□ -1.21
VPS50-204ENST00000438395 JMJD6Q6NYC1 403 aaPredicted RBP7.5□□□□□ -1.21
VPS50-204ENST00000438395 PPP1R21Q6ZMI0 780 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 ZNF517Q6ZMY9 492 aaPredicted RBP7.5□□□□□ -1.21
VPS50-204ENST00000438395 CDHR3Q6ZTQ4 885 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 CHSY3Q70JA7 882 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 PEX26Q7Z412 305 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 TRIM73Q86UV7 250 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 SYCE1Q8N0S2 351 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 TC2NQ8N9U0 490 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 SLC38A9Q8NBW4 561 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 FDCSPQ8NFU4 85 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 OR5AR1Q8NGP9 310 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 PROKR1Q8TCW9 393 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 STYXQ8WUJ0 223 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 DLG3Q92796 817 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 PNPLA2Q96AD5 504 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 PSMG3-AS1Q96PY0 264 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 TRAPPC9Q96Q05 1148 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 SPOCK3Q9BQ16 436 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 GORASP1Q9BQQ3 440 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 AP1M1Q9BXS5 423 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 PHACTR1Q9C0D0 580 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 ILKAPQ9H0C8 392 aaPredicted RBP7.5□□□□□ -1.21
VPS50-204ENST00000438395 ARNT2Q9HBZ2 717 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 NLE1Q9NVX2 485 aaPredicted RBP7.5□□□□□ -1.21
VPS50-204ENST00000438395 OR6C2Q9NZP2 312 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 PLEKHB1Q9UF11 243 aaPredicted RBP7.5□□□□□ -1.21
VPS50-204ENST00000438395 TFR2Q9UP52 801 aa7.5□□□□□ -1.21
VPS50-204ENST00000438395 PTRH2Q9Y3E5 179 aaKnown RBP7.5□□□□□ -1.21
VPS50-204ENST00000438395 UTP20O75691 2785 aaKnown RBP7.49□□□□□ -1.21
VPS50-204ENST00000438395 TRBV5-4A0A0C4DH59 114 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 A0A0J9YY10 115 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 SOWAHDA6NJG2 315 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 AGAP14A8MT82 685 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 MIF4GDA9UHW6 222 aaKnown RBP7.49□□□□□ -1.21
VPS50-204ENST00000438395 ISM1B1AKI9 464 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 H7C0S8 307 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 CEACAM4O75871 244 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 SORBS2O94875 1100 aaKnown RBP7.49□□□□□ -1.21
VPS50-204ENST00000438395 AP2A1O95782 977 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 CHRM5P08912 532 aaPredicted RBP7.49□□□□□ -1.21
VPS50-204ENST00000438395 CDKN1CP49918 316 aaPredicted RBP7.49□□□□□ -1.21
VPS50-204ENST00000438395 PRAMEP78395 509 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 ITIH4Q14624 930 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 KIR2DS3Q14952 304 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 DEFB110Q30KQ9 67 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 AARS2Q5JTZ9 985 aaKnown RBP7.49□□□□□ -1.21
VPS50-204ENST00000438395 ZNF468Q5VIY5 522 aaPredicted RBP7.49□□□□□ -1.21
VPS50-204ENST00000438395 FAM69BQ5VUD6 431 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 SLC6A19Q695T7 634 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 LCN10Q6JVE6 187 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 TLDC1Q6P9B6 456 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 TTC23LQ6PF05 361 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 AFTPHQ6ULP2 937 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 UNC5AQ6ZN44 842 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 TBC1D21Q8IYX1 336 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 ADGRF3Q8IZF5 1079 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 ZADH2Q8N4Q0 377 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 RAB42Q8N4Z0 105 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 TAB3Q8N5C8 712 aaPredicted RBP7.49□□□□□ -1.21
VPS50-204ENST00000438395 ZNF655Q8N720 491 aaPredicted RBP7.49□□□□□ -1.21
VPS50-204ENST00000438395 GLIS1Q8NBF1 620 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 ADAMTS17Q8TE56 1095 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 DENND1AQ8TEH3 1009 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 SKA2Q8WVK7 121 aaPredicted RBP7.49□□□□□ -1.21
VPS50-204ENST00000438395 SLC22A18Q96BI1 424 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 VPS50Q96JG6 964 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 PANX2Q96RD6 677 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 SLC30A3Q99726 388 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 NUDT9Q9BW91 350 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 NEUROD4Q9HD90 331 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 MLXIPLQ9NP71 852 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 INTS7Q9NVH2 962 aaKnown RBP7.49□□□□□ -1.21
VPS50-204ENST00000438395 PIH1D1Q9NWS0 290 aaKnown RBP7.49□□□□□ -1.21
VPS50-204ENST00000438395 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.49□□□□□ -1.21
VPS50-204ENST00000438395 C5AR2Q9P296 337 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 IMPACTQ9P2X3 320 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 AMFRQ9UKV5 643 aa7.49□□□□□ -1.21
VPS50-204ENST00000438395 PLCL2Q9UPR0 1127 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms