RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 LACTB2Q53H82 288 aaPredicted RBP16.83■□□□□ 0.28
PTPRF-209ENST00000438120 KCTD8Q6ZWB6 473 aa16.83■□□□□ 0.28
PTPRF-209ENST00000438120 GALNT7Q86SF2 657 aa16.83■□□□□ 0.28
PTPRF-209ENST00000438120 SATL1Q86VE3 508 aa16.83■□□□□ 0.28
PTPRF-209ENST00000438120 ZCCHC3Q9NUD5 404 aaKnown RBP16.83■□□□□ 0.28
PTPRF-209ENST00000438120 ZNF282Q9UDV7 671 aaPredicted RBP16.83■□□□□ 0.28
PTPRF-209ENST00000438120 PDE10AQ9Y233 779 aa16.83■□□□□ 0.28
PTPRF-209ENST00000438120 KCTD3Q9Y597 815 aa16.83■□□□□ 0.28
PTPRF-209ENST00000438120 HOXC12P31275 282 aa16.83■□□□□ 0.28
PTPRF-209ENST00000438120 DHPSP49366 369 aaPredicted RBP16.83■□□□□ 0.28
PTPRF-209ENST00000438120 SUSD3Q96L08 255 aa16.83■□□□□ 0.28
PTPRF-209ENST00000438120 HSD3B7Q9H2F3 369 aa16.83■□□□□ 0.28
PTPRF-209ENST00000438120 RGS17Q9UGC6 210 aaPredicted RBP16.83■□□□□ 0.28
PTPRF-209ENST00000438120 SCGNO76038 276 aa16.83■□□□□ 0.28
PTPRF-209ENST00000438120 KLK1P06870 262 aa16.83■□□□□ 0.28
PTPRF-209ENST00000438120 ZNF823P16415 610 aa16.83■□□□□ 0.28
PTPRF-209ENST00000438120 CCR8P51685 355 aa16.83■□□□□ 0.28
PTPRF-209ENST00000438120 ARHGDIBP52566 201 aa16.83■□□□□ 0.28
PTPRF-209ENST00000438120 PNLIPRP1P54315 467 aa16.83■□□□□ 0.28
PTPRF-209ENST00000438120 C12orf42Q96LP6 360 aa16.83■□□□□ 0.28
PTPRF-209ENST00000438120 ZDHHC3Q9NYG2 299 aa16.83■□□□□ 0.28
PTPRF-209ENST00000438120 RBMX2Q9Y388 322 aaKnown RBP16.83■□□□□ 0.28
PTPRF-209ENST00000438120 NFKBIEO00221 500 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 MMP20O60882 483 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 VARSP26640 1264 aaKnown RBP16.82■□□□□ 0.28
PTPRF-209ENST00000438120 CCNFP41002 786 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 GATMP50440 423 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 BCAP31P51572 246 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 VLDLRP98155 873 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 PDGFRLQ15198 375 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 ZNF311Q5JNZ3 666 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 FAM92BQ6ZTR7 304 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 RPS27LQ71UM5 84 aaKnown RBP16.82■□□□□ 0.28
PTPRF-209ENST00000438120 SLC39A3Q9BRY0 314 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 TAC3Q9UHF0 121 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 ALPPL2P10696 532 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 IMPDH1P20839 514 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 HADHBP55084 474 aaKnown RBP16.82■□□□□ 0.28
PTPRF-209ENST00000438120 SLC9A4Q6AI14 798 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 NIPA2Q8N8Q9 360 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 OR5T3Q8NGG3 340 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 RFKQ969G6 155 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 ZDHHC4Q9NPG8 344 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 PLAGL1Q9UM63 463 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 GDF5P43026 501 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 PPP3R1P63098 170 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 CRTC2Q53ET0 693 aaPredicted RBP16.82■□□□□ 0.28
PTPRF-209ENST00000438120 CAND1Q86VP6 1230 aaKnown RBP16.82■□□□□ 0.28
PTPRF-209ENST00000438120 CLCC1Q96S66 551 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 ANKHQ9HCJ1 492 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 TBC1D24Q9ULP9 559 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 ERI3O43414 337 aaKnown RBP16.82■□□□□ 0.28
PTPRF-209ENST00000438120 PAPSS2O95340 614 aaPredicted RBP16.82■□□□□ 0.28
PTPRF-209ENST00000438120 ROR2Q01974 943 aaKnown RBP16.82■□□□□ 0.28
PTPRF-209ENST00000438120 RASSF6Q6ZTQ3 369 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 OSTM1Q86WC4 334 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 ACDQ96AP0 544 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 OSBPL7Q9BZF2 842 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 TRPV5Q9NQA5 729 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 FAM234BA2RU67 622 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 ARCN1P48444 511 aaKnown RBP16.82■□□□□ 0.28
PTPRF-209ENST00000438120 KIAA1161Q6NSJ0 714 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 SVOPLQ8N434 492 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 NTAN1Q96AB6 310 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 SLC35A5Q9BS91 424 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 TMEM98Q9Y2Y6 226 aa16.82■□□□□ 0.28
PTPRF-209ENST00000438120 CDC7O00311 574 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 TRMUO75648 421 aaKnown RBP16.81■□□□□ 0.28
PTPRF-209ENST00000438120 BLKP51451 505 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 CLCN4P51793 760 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 DGKQP52824 942 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 CRISP3P54108 245 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 PUM1Q14671 1186 aaKnown RBP eCLIP16.81■□□□□ 0.28
PTPRF-209ENST00000438120 CLDN19Q8N6F1 224 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 MIPEPQ99797 713 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 ZNF395Q9H8N7 513 aaPredicted RBP16.81■□□□□ 0.28
PTPRF-209ENST00000438120 AKTIPQ9H8T0 292 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 BRD7Q9NPI1 651 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 GALPQ9UBC7 116 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 PCDHGA3Q9Y5H0 932 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 AREL1O15033 823 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 MPIP34949 423 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 PPP1R8Q12972 351 aaKnown RBP16.81■□□□□ 0.28
PTPRF-209ENST00000438120 OR4F3Q6IEY1 312 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 COQ8BQ96D53 544 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 SIPA1Q96FS4 1042 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 C8orf48Q96LL4 319 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 TRNAU1APQ9NX07 287 aaKnown RBP16.81■□□□□ 0.28
PTPRF-209ENST00000438120 PMF1-BGLAPU3KQ54 211 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 DNAJA2O60884 412 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 BTN3A2P78410 334 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 IDNKQ5T6J7 187 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 BICRALQ6AI39 1079 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 NUP54Q7Z3B4 507 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 GPN1Q9HCN4 374 aaPredicted RBP16.81■□□□□ 0.28
PTPRF-209ENST00000438120 C8orf4Q9NR00 106 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 OXSMQ9NWU1 459 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 VPS29Q9UBQ0 182 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 A8MT66 165 aa16.81■□□□□ 0.28
PTPRF-209ENST00000438120 TMEM150CB9EJG8 249 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms