RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 KRT87PA6NCN2 255 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 LRRC14BA6NHZ5 514 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 K7EPI3 171 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 SHOX2O60902 331 aaPredicted RBP13.82□□□□□ -0.2
SF3B1-204ENST00000414963 VIPP01282 170 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 ZNF806P0C7X5 589 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 ZNF883P0CG24 379 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 CCND1P24385 295 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 PKLRP30613 574 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 LSP1P33241 339 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 NBL1P41271 181 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 HSPA7P48741 367 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 CCT8P50990 548 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 RAB28P51157 221 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 ABCE1P61221 599 aaKnown RBP13.82□□□□□ -0.2
SF3B1-204ENST00000414963 OCRLQ01968 901 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 PCDH1Q08174 1060 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 RCN2Q14257 317 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 DEFB133Q30KQ1 61 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 PTCHD3Q3KNS1 767 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 TTC19Q6DKK2 380 aaPredicted RBP13.82□□□□□ -0.2
SF3B1-204ENST00000414963 ZCCHC23Q6ZST2 131 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 LRRC70Q7Z2Q7 622 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 TRIM48Q8IWZ4 208 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 ARL14Q8N4G2 192 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 CCNYL1Q8N7R7 359 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 OR52E1Q8NGJ3 308 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 OR2L8Q8NGY9 312 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 SETD7Q8WTS6 366 aaKnown RBP13.82□□□□□ -0.2
SF3B1-204ENST00000414963 PATE1Q8WXA2 126 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 ZNF317Q96PQ6 595 aaPredicted RBP13.82□□□□□ -0.2
SF3B1-204ENST00000414963 DUSP23Q9BVJ7 150 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 IL21RQ9HBE5 538 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 OR6C2Q9NZP2 312 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 HAO1Q9UJM8 370 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.82□□□□□ -0.2
SF3B1-204ENST00000414963 ASB1Q9Y576 335 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 GPR179Q6PRD1 2367 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 FAM221BA6H8Z2 402 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 B4DGG1 531 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 TCP11X1B4DZS4 312 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 SUPT7LO94864 414 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 MLYCDO95822 493 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 ENGP17813 658 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 ARRB2P32121 409 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 SHMT2P34897 504 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 GDF5P43026 501 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 SLC1A6P48664 564 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 CLCQ05315 142 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 NAE1Q13564 534 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 C14orf28Q4W4Y0 310 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 ARL13AQ5H913 290 aaPredicted RBP13.81□□□□□ -0.2
SF3B1-204ENST00000414963 SFTPA2Q8IWL1 248 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 SYTL1Q8IYJ3 562 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 LSMEM2Q8N112 164 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 SMPDL3AQ92484 453 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 ESAMQ96AP7 390 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 SH3KBP1Q96B97 665 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 C7orf26Q96N11 449 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 PITPNM3Q9BZ71 974 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 PCBD2Q9H0N5 130 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 ATG10Q9H0Y0 220 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 ZBTB26Q9HCK0 441 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 DNAJC11Q9NVH1 559 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 INTS7Q9NVH2 962 aaKnown RBP13.81□□□□□ -0.2
SF3B1-204ENST00000414963 OPTCQ9UBM4 332 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 CIDEBQ9UHD4 219 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 PLAGL1Q9UM63 463 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 ICKQ9UPZ9 632 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 PCDHGB2Q9Y5G2 931 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 ZFC3H1O60293 1989 aaKnown RBP13.81□□□□□ -0.2
SF3B1-204ENST00000414963 PI4KAP42356 2102 aa13.81□□□□□ -0.2
SF3B1-204ENST00000414963 ITM2AO43736 263 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 PRICKLE3O43900 615 aaPredicted RBP13.8□□□□□ -0.2
SF3B1-204ENST00000414963 LRP3O75074 770 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 ALPPL2P10696 532 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 EPB42P16452 691 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 GNGT1P63211 74 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 HHEXQ03014 270 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 LCP2Q13094 533 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 GTF2H2Q13888 395 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 GPR18Q14330 331 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 FBXO48Q5FWF7 155 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 CAPN13Q6MZZ7 669 aaPredicted RBP13.8□□□□□ -0.2
SF3B1-204ENST00000414963 ZCCHC8Q6NZY4 707 aaKnown RBP13.8□□□□□ -0.2
SF3B1-204ENST00000414963 GTF2H2CQ6P1K8 395 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 ATG14Q6ZNE5 492 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 DBX2Q6ZNG2 339 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 TMEM26Q6ZUK4 368 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 GOLGA7Q7Z5G4 137 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 THOC6Q86W42 341 aaKnown RBP13.8□□□□□ -0.2
SF3B1-204ENST00000414963 AMIGO1Q86WK6 493 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 TEX9Q8N6V9 391 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 ARL10Q8N8L6 244 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 FAM181AQ8N9Y4 354 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 LINC01555Q8NAE3 123 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 OR4C6Q8NH72 309 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 PPP4R1Q8TF05 950 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 LCN9Q8WX39 176 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 ATOH1Q92858 354 aaPredicted RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms