RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 SNX31Q8N9S9 440 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 TRPV3Q8NET8 790 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 SKA2Q8WVK7 121 aaPredicted RBP13.23□□□□□ -0.29
LIMS1-205ENST00000410093 SLC13A3Q8WWT9 602 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 VPS33AQ96AX1 596 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 AP2M1Q96CW1 435 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 DTD2Q96FN9 168 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 TEX37Q96LM6 180 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 ZNF597Q96LX8 424 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 CCDC115Q96NT0 180 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 C9orf16Q9BUW7 83 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 RIOK2Q9BVS4 552 aaKnown RBP13.23□□□□□ -0.29
LIMS1-205ENST00000410093 ABCG8Q9H221 673 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 CLMPQ9H6B4 373 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 RMND5AQ9H871 391 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 IL1RL2Q9HB29 575 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 GPRC5BQ9NZH0 403 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 RNF11Q9Y3C5 154 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 POLR3HQ9Y535 204 aaPredicted RBP13.23□□□□□ -0.29
LIMS1-205ENST00000410093 BRWD1Q9NSI6 2320 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 C17orf113A0A1B0GUU1 675 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 VGLL3A8MV65 326 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 ARPC2O15144 300 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 CTSLP07711 333 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 ZNF26P17031 533 aaPredicted RBP13.23□□□□□ -0.29
LIMS1-205ENST00000410093 IL12AP29459 219 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 LTBRP36941 435 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 ETV3P41162 512 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 CLDN8P56748 225 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 DLX2Q07687 328 aaPredicted RBP13.23□□□□□ -0.29
LIMS1-205ENST00000410093 KIAA0040Q15053 153 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 ACOX1Q15067 660 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 ADRM1Q16186 407 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 MAPKAPK3Q16644 382 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 DUSP6Q16828 381 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 TBCELQ5QJ74 424 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 PPP4R4Q6NUP7 873 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 DLEU7Q6UYE1 221 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 NUDT18Q6ZVK8 323 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 SLC22A15Q8IZD6 547 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 RGL4Q8IZJ4 473 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 DNAJB14Q8TBM8 379 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 SELENOMQ8WWX9 145 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 SLCO4A1Q96BD0 722 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 PPWD1Q96BP3 646 aaKnown RBP13.23□□□□□ -0.29
LIMS1-205ENST00000410093 TESCQ96BS2 214 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 COQ10AQ96MF6 247 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 ASB16Q96NS5 453 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 CGREF1Q99674 301 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 SLC39A3Q9BRY0 314 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 CENPKQ9BS16 269 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 ACTL8Q9H568 366 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 BRF2Q9HAW0 419 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 ANAPC2Q9UJX6 822 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 CNOT6Q9ULM6 557 aaKnown RBP13.23□□□□□ -0.29
LIMS1-205ENST00000410093 PADI4Q9UM07 663 aa13.23□□□□□ -0.29
LIMS1-205ENST00000410093 MUC22E2RYF6 1773 aaPredicted RBP13.22□□□□□ -0.29
LIMS1-205ENST00000410093 TTC28Q96AY4 2481 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 KCNE1BA0A087WTH5 132 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 SLC5A10A0PJK1 596 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 DPPA5A6NC42 116 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 KLHL33A6NCF5 533 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 TXNDC9O14530 226 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 MBTPS2O43462 519 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 SGTAO43765 313 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 TNFAIP8O95379 198 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 ATP6V1B2P21281 511 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 EIF2DP41214 584 aaKnown RBP13.22□□□□□ -0.29
LIMS1-205ENST00000410093 GDF5P43026 501 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 SH3BGRP55822 239 aaPredicted RBP13.22□□□□□ -0.29
LIMS1-205ENST00000410093 C21orf58P58505 322 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 TMEM115Q12893 351 aaPredicted RBP13.22□□□□□ -0.29
LIMS1-205ENST00000410093 CAPRIN1Q14444 709 aaKnown RBP13.22□□□□□ -0.29
LIMS1-205ENST00000410093 PTCHD3Q3KNS1 767 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 TMEM52BQ4KMG9 183 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 USP39Q53GS9 565 aaKnown RBP13.22□□□□□ -0.29
LIMS1-205ENST00000410093 FRG2Q64ET8 278 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 CYP2R1Q6VVX0 501 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 RFLNAQ6ZTI6 216 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 KIAA2013Q8IYS2 634 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 CANT1Q8WVQ1 401 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 ING5Q8WYH8 240 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 SCAMP4Q969E2 229 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 REPS1Q96D71 796 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 CENPNQ96H22 339 aaPredicted RBP13.22□□□□□ -0.29
LIMS1-205ENST00000410093 FCRL1Q96LA6 429 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 LINC00615Q96LM1 132 aaPredicted RBP13.22□□□□□ -0.29
LIMS1-205ENST00000410093 FRG2BQ96QU4 278 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 DYRK4Q9NR20 520 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 AGPAT4Q9NRZ5 378 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 CD84Q9UIB8 345 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 TSR3Q9UJK0 312 aaKnown RBP13.22□□□□□ -0.29
LIMS1-205ENST00000410093 GPR34Q9UPC5 381 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 MAN2B2Q9Y2E5 1009 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 AP4B1Q9Y6B7 739 aa13.22□□□□□ -0.29
LIMS1-205ENST00000410093 FADS2P1A8MWK0 482 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 C1QTNF3-AMACRE9PGA6 284 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 H0YIV9 168 aa13.21□□□□□ -0.29
LIMS1-205ENST00000410093 KPNA3O00505 521 aaPredicted RBP13.21□□□□□ -0.29
LIMS1-205ENST00000410093 CLGNO14967 610 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms