RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 ULK4Q96C45 1275 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 MRGPRX3Q96LB0 322 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 THUMPD3Q9BV44 507 aaKnown RBP13.04□□□□□ -0.32
CCDC3-202ENST00000378839 BBS2Q9BXC9 721 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 PARVBQ9HBI1 364 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 ASIC5Q9NY37 505 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 SMPD3Q9NY59 655 aaPredicted RBP13.04□□□□□ -0.32
CCDC3-202ENST00000378839 GPRC5BQ9NZH0 403 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 FAM8A1Q9UBU6 413 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 MAGEL2Q9UJ55 1249 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 MAFFQ9ULX9 164 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 SLC8A2Q9UPR5 921 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 TMX2-CTNND1H3BSU7 103 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 GFYI3L273 518 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 B4GAT1O43505 415 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 ANXA6P08133 673 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 CBSLP0DN79 551 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 PABPC1P11940 636 aaKnown RBP13.04□□□□□ -0.32
CCDC3-202ENST00000378839 ATP1B2P14415 290 aaPredicted RBP13.04□□□□□ -0.32
CCDC3-202ENST00000378839 CBSP35520 551 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 IMPG1Q17R60 797 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 CCSMST1Q4G0I0 132 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 AASDHQ4L235 1098 aaPredicted RBP13.04□□□□□ -0.32
CCDC3-202ENST00000378839 ADNP2Q6IQ32 1131 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 TRIML2Q8N7C3 387 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 ZNF366Q8N895 744 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 ITFG1Q8TB96 612 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 SKA2Q8WVK7 121 aaPredicted RBP13.04□□□□□ -0.32
CCDC3-202ENST00000378839 GFM2Q969S9 779 aaKnown RBP13.04□□□□□ -0.32
CCDC3-202ENST00000378839 OR52E6Q96RD3 313 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 ASAH2Q9NR71 780 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 DNAAF2Q9NVR5 837 aaKnown RBP13.04□□□□□ -0.32
CCDC3-202ENST00000378839 GRM6O15303 877 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 NUAK1O60285 661 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 LRATO95237 230 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 FCGR1AP12314 374 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 TYRP14679 529 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 FUT4P22083 530 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 SHMT2P34897 504 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 POLR2IP36954 125 aaKnown RBP13.03□□□□□ -0.32
CCDC3-202ENST00000378839 PTPN5P54829 565 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 PFN3P60673 137 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 MESP2Q0VG99 397 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 TTLL9Q3SXZ7 439 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.03□□□□□ -0.32
CCDC3-202ENST00000378839 GDPD4Q6W3E5 623 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 TMEM179BQ7Z7N9 219 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 CCDC115Q96NT0 180 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 TSSK3Q96PN8 268 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 KAT8Q9H7Z6 458 aaKnown RBP13.03□□□□□ -0.32
CCDC3-202ENST00000378839 GORASP2Q9H8Y8 452 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.03□□□□□ -0.32
CCDC3-202ENST00000378839 OR2AG2A6NM03 316 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 IFRD1O00458 451 aaPredicted RBP13.03□□□□□ -0.32
CCDC3-202ENST00000378839 MAGEB3O15480 346 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 LEFTY1O75610 366 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 SDC1P18827 310 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 CAPGP40121 348 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 METAP1P53582 386 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 LY6G5CQ5SRR4 150 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 TTC33Q6PID6 262 aaPredicted RBP13.03□□□□□ -0.32
CCDC3-202ENST00000378839 PRR23BQ6ZRT6 265 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 HM13Q8TCT9 377 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 ZNF641Q96N77 438 aaPredicted RBP13.03□□□□□ -0.32
CCDC3-202ENST00000378839 LRRC3BQ96PB8 259 aa13.03□□□□□ -0.32
CCDC3-202ENST00000378839 BMP10O95393 424 aa13.02□□□□□ -0.32
CCDC3-202ENST00000378839 TIMP1P01033 207 aa13.02□□□□□ -0.32
CCDC3-202ENST00000378839 IL6P05231 212 aa13.02□□□□□ -0.32
CCDC3-202ENST00000378839 KCTD21Q4G0X4 260 aa13.02□□□□□ -0.32
CCDC3-202ENST00000378839 ARSIQ5FYB1 569 aa13.02□□□□□ -0.32
CCDC3-202ENST00000378839 GCNT7Q6ZNI0 430 aa13.02□□□□□ -0.32
CCDC3-202ENST00000378839 METTL3Q86U44 580 aaKnown RBP13.02□□□□□ -0.32
CCDC3-202ENST00000378839 CALHM3Q86XJ0 350 aa13.02□□□□□ -0.32
CCDC3-202ENST00000378839 RASGRP3Q8IV61 690 aa13.02□□□□□ -0.32
CCDC3-202ENST00000378839 NETO1Q8TDF5 533 aa13.02□□□□□ -0.32
CCDC3-202ENST00000378839 SELENOMQ8WWX9 145 aa13.02□□□□□ -0.32
CCDC3-202ENST00000378839 SGCDQ92629 289 aa13.02□□□□□ -0.32
CCDC3-202ENST00000378839 IRF7Q92985 503 aa13.02□□□□□ -0.32
CCDC3-202ENST00000378839 TCF25Q9BQ70 676 aa13.02□□□□□ -0.32
CCDC3-202ENST00000378839 SLC29A3Q9BZD2 475 aa13.02□□□□□ -0.32
CCDC3-202ENST00000378839 SMURF2Q9HAU4 748 aa13.02□□□□□ -0.32
CCDC3-202ENST00000378839 ADGRE2Q9UHX3 823 aa13.02□□□□□ -0.32
CCDC3-202ENST00000378839 WNT6Q9Y6F9 365 aa13.02□□□□□ -0.32
CCDC3-202ENST00000378839 YY2O15391 372 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 ALPLP05186 524 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 RAP2AP10114 183 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 TIMP2P16035 220 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 MTHFRP42898 656 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 RPS14P62263 151 aaKnown RBP13.02□□□□□ -0.33
CCDC3-202ENST00000378839 CACHD1Q5VU97 1274 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 HIC2Q96JB3 615 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 MUS81Q96NY9 551 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 HHIPQ96QV1 700 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 CPPED1Q9BRF8 314 aaPredicted RBP13.02□□□□□ -0.33
CCDC3-202ENST00000378839 EBPLQ9BY08 206 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 PCDH12Q9NPG4 1184 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 EBF1Q9UH73 591 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 MYO7AQ13402 2215 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 PRKD3O94806 890 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 OR56A5P0C7T3 313 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms