RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 NEU2Q9Y3R4 380 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 NPTNQ9Y639 398 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 PTPRJQ12913 1337 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 SERTM2A0A1B0GWG4 89 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 UGT2B11O75310 529 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 RCBTB2O95199 551 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 CATP04040 527 aaKnown RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 SNRPB2P08579 225 aaKnown RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 FCGR1AP12314 374 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 HLA-DMAP28067 261 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 NDST1P52848 882 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 EIF5AP63241 154 aaKnown RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 IRF8Q02556 426 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 GINS1Q14691 196 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ZIK1Q3SY52 487 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 TCHHL1Q5QJ38 904 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 CHSY3Q70JA7 882 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 GDPD3Q7L5L3 318 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 DNAJC10Q8IXB1 793 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 CLIP4Q8N3C7 705 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 TSTD1Q8NFU3 115 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 OR2M3Q8NG83 312 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 HDAC10Q969S8 669 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 SCGB3A2Q96PL1 93 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 HAPLN3Q96S86 360 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 FAM126AQ9BYI3 521 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ZBTB26Q9HCK0 441 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 MAN2C1Q9NTJ4 1040 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 SLC35F4A4IF30 521 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 FAM149AA5PLN7 773 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 GGT3PA6NGU5 568 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 SLC7A4O43246 635 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 UNC5CO95185 931 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 CNIH1O95406 144 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 PIM1P11309 404 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 VDRP11473 427 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 SLC1A6P48664 564 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 RAB27AP51159 221 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 AKR1C2P52895 323 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 TBX4P57082 545 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 MALLQ13021 153 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 VPS72Q15906 364 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 TIGD5Q53EQ6 642 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 C4orf17Q53FE4 359 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 MANEAQ5SRI9 462 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 GPAT2Q6NUI2 795 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF549Q6P9A3 640 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF767PQ75MW2 155 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 TMPRSS11BQ86T26 416 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 DCP2Q8IU60 420 aaKnown RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 IQCKQ8N0W5 287 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 LINC00301Q8NCQ3 95 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 THAP3Q8WTV1 239 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 DDX1Q92499 740 aaKnown RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 MUL1Q969V5 352 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 GRAMD1AQ96CP6 724 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ZC3HAV1LQ96H79 300 aaKnown RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 DGAT2Q96PD7 388 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ERMAPQ96PL5 475 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 RIT2Q99578 217 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ORAI3Q9BRQ5 295 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 WRAP53Q9BUR4 548 aaKnown RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 MRI1Q9BV20 369 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 DPCDQ9BVM2 203 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 OCEL1Q9H607 264 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 SMOXQ9NWM0 555 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 RRN3Q9NYV6 651 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ASB3Q9Y575 518 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 FLT4P35916 1363 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 TRAF3IP2O43734 574 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 TBL1XO60907 577 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 YIF1AO95070 293 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 GOSR1O95249 250 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 TSPAN15O95858 294 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 MDH1P40925 334 aaKnown RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF143P52747 638 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 GNB1P62873 340 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 RAB33AQ14088 237 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 MELKQ14680 651 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF674Q2M3X9 581 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 C3orf38Q5JPI3 329 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 SLFN11Q7Z7L1 901 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 TMEM173Q86WV6 379 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 GALNT13Q8IUC8 556 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 LILRB2Q8N423 598 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 OR7A2PQ8NGA2 310 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 THAP6Q8TBB0 222 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 OXER1Q8TDS5 423 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 GIMAP1Q8WWP7 306 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 RHBDF1Q96CC6 855 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 FDXACB1Q9BRP7 624 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 KATNBL1Q9H079 304 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 C1orf21Q9H246 121 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 DPAGT1Q9H3H5 408 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 SETD4Q9NVD3 440 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 NDUFAF1Q9Y375 327 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 PCDHB14Q9Y5E9 798 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 IQGAP2Q13576 1575 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 NUP160Q12769 1436 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 A0A1W2PR64 198 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms