RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 USP30Q70CQ3 517 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 BDH2Q9BUT1 245 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 FZD4Q9ULV1 537 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 A0A1B0GTW7 788 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 ERI3O43414 337 aaKnown RBP9.91□□□□□ -0.82
USP54-201ENST00000339859 TIMP2P16035 220 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 FASP25445 335 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 P2RY2P41231 377 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 YPEL5P62699 121 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 FGL2Q14314 439 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 GCNT6Q5T4J0 391 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 COL13A1Q5TAT6 717 aaPredicted RBP9.91□□□□□ -0.82
USP54-201ENST00000339859 ERICH5Q6P6B1 374 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 CASP12Q6UXS9 341 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 RSPO2Q6UXX9 243 aaPredicted RBP9.91□□□□□ -0.82
USP54-201ENST00000339859 LRRC69Q6ZNQ3 347 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 TBC1D21Q8IYX1 336 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 KIF2BQ8N4N8 673 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 NOL6Q9H6R4 1146 aaKnown RBP9.91□□□□□ -0.82
USP54-201ENST00000339859 PRSS16Q9NQE7 514 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 PNPOQ9NVS9 261 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 LDOC1O95751 146 aaPredicted RBP9.91□□□□□ -0.82
USP54-201ENST00000339859 COX4I1P13073 169 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 POU1F1P28069 291 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 GRIN2CQ14957 1233 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 TRIP10Q15642 601 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 C10orf62Q5T681 223 aaPredicted RBP9.91□□□□□ -0.82
USP54-201ENST00000339859 FBXW10Q5XX13 1052 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 IL22RA1Q8N6P7 574 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 SLC9A6Q92581 669 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 PHF21AQ96BD5 680 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 SCHIP1Q9P0W5 487 aaPredicted RBP9.91□□□□□ -0.82
USP54-201ENST00000339859 RAPGEFL1Q9UHV5 662 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 PCDH7O60245 1069 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 TPST1O60507 370 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 ME2P23368 584 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 RPS15AP62244 130 aaKnown RBP9.91□□□□□ -0.82
USP54-201ENST00000339859 CAPRIN2Q6IMN6 1127 aaKnown RBP9.91□□□□□ -0.82
USP54-201ENST00000339859 NAT6Q93015 286 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 GPR22Q99680 433 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 PRRX2Q99811 253 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 BTBD10Q9BSF8 475 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 RSPH9Q9H1X1 276 aaPredicted RBP9.91□□□□□ -0.82
USP54-201ENST00000339859 RIMKLBQ9ULI2 386 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 TRPM7Q96QT4 1865 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 TNFRSF10BO14763 440 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 PLIN3O60664 434 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 HMGA1P17096 107 aaKnown RBP9.91□□□□□ -0.82
USP54-201ENST00000339859 BNIP2Q12982 314 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 TAF13Q15543 124 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 TBC1D25Q3MII6 688 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 PNCKQ6P2M8 343 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 PROSER1Q86XN7 944 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 KDM1BQ8NB78 822 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 SLC13A3Q8WWT9 602 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 EBPLQ9BY08 206 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 TEX264Q9Y6I9 313 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 AHSGP02765 367 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 RAD23AP54725 363 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 IRF9Q00978 393 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 KLF1Q13351 362 aaPredicted RBP9.91□□□□□ -0.82
USP54-201ENST00000339859 DUOXA1Q1HG43 343 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 BROXQ5VW32 411 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 CLHC1Q8NHS4 586 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 DTD2Q96FN9 168 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 SPAG4Q9NPE6 437 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 SLC22A14Q9Y267 594 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 OARD1Q9Y530 152 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 SNX13Q9Y5W8 968 aa9.91□□□□□ -0.82
USP54-201ENST00000339859 RPS15P62841 145 aaKnown RBP9.9□□□□□ -0.82
USP54-201ENST00000339859 ZNF252P-AS1Q0IIN9 211 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 OLIG2Q13516 323 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 NFATC4Q14934 902 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 IL23RQ5VWK5 629 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 GALNT4Q8N4A0 578 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 ADAMTS18Q8TE60 1221 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 IER2Q9BTL4 223 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 REEP1Q9H902 201 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 PRAMEF12O95522 483 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 TFPIP10646 304 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 EPHA3P29320 983 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 LEPRP48357 1165 aaKnown RBP9.9□□□□□ -0.82
USP54-201ENST00000339859 AFF3P51826 1226 aaKnown RBP9.9□□□□□ -0.82
USP54-201ENST00000339859 NCBP2P52298 156 aaKnown RBP eCLIP9.9□□□□□ -0.82
USP54-201ENST00000339859 HNRNPH2P55795 449 aaKnown RBP9.9□□□□□ -0.82
USP54-201ENST00000339859 ACY1Q03154 408 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 CLDN19Q8N6F1 224 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 SEPHS2Q99611 448 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 FNDC11Q9BVV2 318 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 PPM1HQ9ULR3 514 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 HS3ST2Q9Y278 367 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 KIR2DS5A0A0G2JLQ3 304 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 A0A0G2JNG1 304 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 LRRC14BA6NHZ5 514 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 KIR2DS3K7RE56 304 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 TOR1BO14657 336 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 BNC1Q01954 994 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 KIR2DS5Q14953 304 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 ASPGQ86U10 573 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 TSPAN33Q86UF1 283 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms