RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 SLITRK5O94991 958 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 FGF19O95750 216 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 ZNF24P17028 368 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 STOMP27105 288 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 FBXO48Q5FWF7 155 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 ZDHHC20Q5W0Z9 365 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 CYP4V2Q6ZWL3 525 aaPredicted RBP11.28□□□□□ -0.6
VPS39-201ENST00000318006 GJD3Q8N144 294 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 PSMG2Q969U7 264 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 EMID1Q96A84 441 aaPredicted RBP11.28□□□□□ -0.6
VPS39-201ENST00000318006 ZUFSPQ96AP4 578 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 BORCS6Q96GS4 357 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 CAPNS2Q96L46 248 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 HAPLN3Q96S86 360 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 Q9Y3F1 56 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 ZFP37Q9Y6Q3 630 aaPredicted RBP11.28□□□□□ -0.6
VPS39-201ENST00000318006 NUP188Q5SRE5 1749 aa11.27□□□□□ -0.6
VPS39-201ENST00000318006 MYOCOSA0A1B0GUC4 107 aa11.27□□□□□ -0.6
VPS39-201ENST00000318006 PPEF2O14830 753 aa11.27□□□□□ -0.6
VPS39-201ENST00000318006 NME6O75414 186 aaPredicted RBP11.27□□□□□ -0.6
VPS39-201ENST00000318006 VARSP26640 1264 aaKnown RBP11.27□□□□□ -0.6
VPS39-201ENST00000318006 HSPA7P48741 367 aa11.27□□□□□ -0.6
VPS39-201ENST00000318006 CXCR3P49682 368 aa11.27□□□□□ -0.6
VPS39-201ENST00000318006 TMEM44Q2T9K0 475 aa11.27□□□□□ -0.6
VPS39-201ENST00000318006 FAM46CQ5VWP2 391 aa11.27□□□□□ -0.6
VPS39-201ENST00000318006 KIAA0930Q6ICG6 404 aaPredicted RBP11.27□□□□□ -0.6
VPS39-201ENST00000318006 LINGO4Q6UY18 593 aa11.27□□□□□ -0.6
VPS39-201ENST00000318006 ASB18Q6ZVZ8 466 aa11.27□□□□□ -0.6
VPS39-201ENST00000318006 ANKRD13BQ86YJ7 626 aa11.27□□□□□ -0.6
VPS39-201ENST00000318006 OR10G2Q8NGC3 310 aa11.27□□□□□ -0.6
VPS39-201ENST00000318006 BPIFB1Q8TDL5 484 aa11.27□□□□□ -0.6
VPS39-201ENST00000318006 ASB12Q8WXK4 309 aa11.27□□□□□ -0.6
VPS39-201ENST00000318006 RDH12Q96NR8 316 aa11.27□□□□□ -0.6
VPS39-201ENST00000318006 COL21A1Q96P44 957 aa11.27□□□□□ -0.6
VPS39-201ENST00000318006 HBEGFQ99075 208 aa11.27□□□□□ -0.6
VPS39-201ENST00000318006 CGREF1Q99674 301 aa11.27□□□□□ -0.6
VPS39-201ENST00000318006 ZSCAN5AQ9BUG6 496 aa11.27□□□□□ -0.6
VPS39-201ENST00000318006 SIRPGQ9P1W8 387 aa11.27□□□□□ -0.6
VPS39-201ENST00000318006 H0YAE9 185 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 RPS3P23396 243 aaKnown RBP eCLIP11.27□□□□□ -0.61
VPS39-201ENST00000318006 RPS14P62263 151 aaKnown RBP11.27□□□□□ -0.61
VPS39-201ENST00000318006 EIF5AP63241 154 aaKnown RBP11.27□□□□□ -0.61
VPS39-201ENST00000318006 RGS1Q08116 209 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 HLA-DQA1Q5Y7H0 255 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 TIFABQ6ZNK6 161 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 CHSY3Q70JA7 882 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 TMEM209Q96SK2 561 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 HERC2P3Q9BVR0 1158 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 CCSER2Q9H7U1 834 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 AKTIPQ9H8T0 292 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 KCTD5Q9NXV2 234 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 ZDHHC2Q9UIJ5 367 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 MAB21L2Q9Y586 359 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 PCDHGC4Q9Y5F7 938 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 MAU2Q9Y6X3 613 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 HTR3EA5X5Y0 456 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 CENPBD1B2RD01 187 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 CCL22O00626 93 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 INSIG1O15503 277 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 ADH1CP00326 375 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 APOC1P02654 83 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 ERP29P30040 261 aaKnown RBP11.27□□□□□ -0.61
VPS39-201ENST00000318006 HERVK_113P63132 956 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 CRHR2Q13324 411 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 EFR3AQ14156 821 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 PLPP4Q5VZY2 271 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 OR2T5Q6IEZ7 315 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 CIR1Q86X95 450 aaPredicted RBP11.27□□□□□ -0.61
VPS39-201ENST00000318006 NAT16Q8N8M0 369 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 OR2T29Q8NH02 315 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 CEP76Q8TAP6 659 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 C2orf15Q8WU43 125 aaKnown RBP11.27□□□□□ -0.61
VPS39-201ENST00000318006 OR8D1Q8WZ84 308 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 ERVK-6Q9BXR3 956 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 BHLHE41Q9C0J9 482 aaPredicted RBP11.27□□□□□ -0.61
VPS39-201ENST00000318006 TMLHEQ9NVH6 421 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 TVP23BQ9NYZ1 205 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 EIF2B4Q9UI10 523 aaKnown RBP11.27□□□□□ -0.61
VPS39-201ENST00000318006 MAP4K5Q9Y4K4 846 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 TEX264Q9Y6I9 313 aa11.27□□□□□ -0.61
VPS39-201ENST00000318006 KANTRA0A1W2PQU2 76 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 NEMP2A6NFY4 417 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 PLD2O14939 933 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 AXIN1O15169 862 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 SLC7A4O43246 635 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 ANXA4P09525 319 aaPredicted RBP11.26□□□□□ -0.61
VPS39-201ENST00000318006 C7P10643 843 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 NOVP48745 357 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 RELAQ04206 551 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 SRSF11Q05519 484 aaKnown RBP11.26□□□□□ -0.61
VPS39-201ENST00000318006 CACNG1Q06432 222 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 KCNJ11Q14654 390 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 TSTQ16762 297 aaKnown RBP11.26□□□□□ -0.61
VPS39-201ENST00000318006 CTC1Q2NKJ3 1217 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 HSD17B12Q53GQ0 312 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 TOMM5Q8N4H5 51 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 SLC35F5Q8WV83 523 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 TNKS2Q9H2K2 1166 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 MAT2BQ9NZL9 334 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 L7N2F9 121 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms