RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 DAPP51397 102 aa13.14□□□□□ -0.31
SKA3-202ENST00000314759 PPP5CP53041 499 aa13.14□□□□□ -0.31
SKA3-202ENST00000314759 IRF5Q13568 498 aa13.14□□□□□ -0.31
SKA3-202ENST00000314759 SMN1Q16637 294 aaKnown RBP13.14□□□□□ -0.31
SKA3-202ENST00000314759 SGO1Q5FBB7 561 aa13.14□□□□□ -0.31
SKA3-202ENST00000314759 ATG9BQ674R7 924 aa13.14□□□□□ -0.31
SKA3-202ENST00000314759 CXCL17Q6UXB2 119 aa13.14□□□□□ -0.31
SKA3-202ENST00000314759 ADAMTSL2Q86TH1 951 aa13.14□□□□□ -0.31
SKA3-202ENST00000314759 FUBP3Q96I24 572 aaKnown RBP eCLIP13.14□□□□□ -0.31
SKA3-202ENST00000314759 ASPSCR1Q9BZE9 553 aa13.14□□□□□ -0.31
SKA3-202ENST00000314759 P2RY12Q9H244 342 aa13.14□□□□□ -0.31
SKA3-202ENST00000314759 RNF181Q9P0P0 153 aa13.14□□□□□ -0.31
SKA3-202ENST00000314759 TPRKBQ9Y3C4 175 aa13.14□□□□□ -0.31
SKA3-202ENST00000314759 FAM220BPB1ANY3 271 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 TBX1O43435 398 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 SEC22BO75396 215 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 MT-ND2P03891 347 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 GSNP06396 782 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 MYCLP1P12525 358 aaPredicted RBP13.13□□□□□ -0.31
SKA3-202ENST00000314759 ITGB6P18564 788 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 PAX3P23760 479 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 SLC6A4P31645 630 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 GNPDA1P46926 289 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 IL1RL1Q01638 556 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 SPRYD7Q5W111 196 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 CAPN13Q6MZZ7 669 aaPredicted RBP13.13□□□□□ -0.31
SKA3-202ENST00000314759 ZNF280BQ86YH2 543 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 MMAAQ8IVH4 418 aaKnown RBP13.13□□□□□ -0.31
SKA3-202ENST00000314759 SETD9Q8NE22 299 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 FAM83FQ8NEG4 500 aaPredicted RBP13.13□□□□□ -0.31
SKA3-202ENST00000314759 FAM120BQ96EK7 910 aaKnown RBP13.13□□□□□ -0.31
SKA3-202ENST00000314759 TXNDC15Q96J42 360 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 MAGEH1Q9H213 219 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 CCSER2Q9H7U1 834 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 MARCH7Q9H992 704 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 C1orf109Q9NX04 203 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 RAI2Q9Y5P3 530 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 GREB1Q4ZG55 1949 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 F5H5T6 163 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 RFPL2O75678 378 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 RECQL5O94762 991 aaPredicted RBP13.13□□□□□ -0.31
SKA3-202ENST00000314759 PARNO95453 639 aaKnown RBP13.13□□□□□ -0.31
SKA3-202ENST00000314759 FADS2O95864 444 aaKnown RBP13.13□□□□□ -0.31
SKA3-202ENST00000314759 DLGAP3O95886 979 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 IL1RNP18510 177 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 MAD2L1Q13257 205 aaPredicted RBP13.13□□□□□ -0.31
SKA3-202ENST00000314759 DSC3Q14574 896 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 CACHD1Q5VU97 1274 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 STEAP3Q658P3 488 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 SAPCD2Q86UD0 394 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 ZDHHC21Q8IVQ6 265 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 RGL4Q8IZJ4 473 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 PARK7Q99497 189 aaKnown RBP13.13□□□□□ -0.31
SKA3-202ENST00000314759 CPPED1Q9BRF8 314 aaPredicted RBP13.13□□□□□ -0.31
SKA3-202ENST00000314759 TNKS2Q9H2K2 1166 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 SERHLQ9NQF3 203 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 OLA1Q9NTK5 396 aaKnown RBP13.13□□□□□ -0.31
SKA3-202ENST00000314759 Q9Y3F1 56 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 BRCA2P51587 3418 aa13.13□□□□□ -0.31
SKA3-202ENST00000314759 RAD51BO15315 384 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 ULK1O75385 1050 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 UPK1BO75841 260 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 B3GALT4O96024 378 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 F11P03951 625 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 S100BP04271 92 aaPredicted RBP13.12□□□□□ -0.31
SKA3-202ENST00000314759 EPHA2P29317 976 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 GRK3P35626 688 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 MAGEA2P43356 314 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 ST13P50502 369 aaKnown RBP13.12□□□□□ -0.31
SKA3-202ENST00000314759 CDC20Q12834 499 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 CAMK2BQ13554 666 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 NFE2Q16621 373 aaPredicted RBP13.12□□□□□ -0.31
SKA3-202ENST00000314759 COLEC12Q5KU26 742 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 USP50Q70EL3 339 aaPredicted RBP13.12□□□□□ -0.31
SKA3-202ENST00000314759 SERINC5Q86VE9 423 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 POC5Q8NA72 575 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 ZNF540Q8NDQ6 660 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 LGALS12Q96DT0 336 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 LRTM1Q9HBL6 345 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 ACOT13Q9NPJ3 140 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 TLR8Q9NR97 1041 aaKnown RBP13.12□□□□□ -0.31
SKA3-202ENST00000314759 SCN3BQ9NY72 215 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 AGO1Q9UL18 857 aaKnown RBP13.12□□□□□ -0.31
SKA3-202ENST00000314759 ZNF490Q9ULM2 529 aaPredicted RBP13.12□□□□□ -0.31
SKA3-202ENST00000314759 ABCG2Q9UNQ0 655 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 CHD5Q8TDI0 1954 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 SLC28A1O00337 649 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 PER2O15055 1255 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 EIF2S1P05198 315 aaKnown RBP13.12□□□□□ -0.31
SKA3-202ENST00000314759 THPOP40225 353 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 FCGRTP55899 365 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 CXCR4P61073 352 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 RING1Q06587 406 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 KEAP1Q14145 624 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.12□□□□□ -0.31
SKA3-202ENST00000314759 MFSD4BQ5TF39 518 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 KDM4DQ6B0I6 523 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 USP43Q70EL4 1123 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 TRIM46Q7Z4K8 759 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 ANKRD46Q86W74 232 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms