RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 KLHDC10Q6PID8 442 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 USP43Q70EL4 1123 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 LYSMD3Q7Z3D4 306 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 PIM3Q86V86 326 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 RANBP3LQ86VV4 465 aaPredicted RBP10.53□□□□□ -0.72
CD44-201ENST00000263398 CILP2Q8IUL8 1156 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 DERL2Q9GZP9 239 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 SP140LQ9H930 580 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 C11orf16Q9NQ32 467 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 TAS2R7Q9NYW3 318 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 TVP23BQ9NYZ1 205 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 CFL2Q9Y281 166 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 BHMG1C9JSJ3 638 aaPredicted RBP10.53□□□□□ -0.72
CD44-201ENST00000263398 TBX1O43435 398 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 RLN1P04808 185 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 ACVRL1P37023 503 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 PIK3CBP42338 1070 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 CLCN4P51793 760 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 PLA2G16P53816 162 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 TUBA4AP68366 448 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 OLIG2Q13516 323 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 SPATS1Q496A3 300 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 TNFAIP8L2Q6P589 184 aaPredicted RBP10.53□□□□□ -0.72
CD44-201ENST00000263398 LRRC70Q7Z2Q7 622 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 TREML1Q86YW5 311 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 TMEM126BQ8IUX1 230 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 OR10H5Q8NGA6 315 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 LCN9Q8WX39 176 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 ANKRA2Q9H9E1 313 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 GPN1Q9HCN4 374 aaPredicted RBP10.53□□□□□ -0.72
CD44-201ENST00000263398 FBXW2Q9UKT8 454 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 SNX7Q9UNH6 387 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 SCML2Q9UQR0 700 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 Q9Y3F1 56 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 CLDN4O14493 209 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 WASP42768 502 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 CRISP3P54108 245 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 DNAJB13P59910 316 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 ABATP80404 500 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 ABHD18Q0P651 414 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 NDUFA9Q16795 377 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 TIGD6Q17RP2 521 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 CRTC2Q53ET0 693 aaPredicted RBP10.53□□□□□ -0.72
CD44-201ENST00000263398 CARD16Q5EG05 197 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 OR14C36Q8NHC7 312 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 TAMM41Q96BW9 452 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 ADAM7Q9H2U9 754 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 MRM3Q9HC36 420 aaKnown RBP10.53□□□□□ -0.72
CD44-201ENST00000263398 ZCCHC3Q9NUD5 404 aaKnown RBP10.53□□□□□ -0.72
CD44-201ENST00000263398 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.53□□□□□ -0.72
CD44-201ENST00000263398 SRPRAP08240 638 aaKnown RBP10.53□□□□□ -0.72
CD44-201ENST00000263398 FMO3P31513 532 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 ILF3Q12906 894 aaKnown RBP eCLIP10.53□□□□□ -0.72
CD44-201ENST00000263398 TARDBPQ13148 414 aaKnown RBP eCLIP10.53□□□□□ -0.72
CD44-201ENST00000263398 TAS1R3Q7RTX0 852 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 DNAJB7Q7Z6W7 309 aaPredicted RBP10.53□□□□□ -0.72
CD44-201ENST00000263398 NATD1Q8N6N6 113 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 KREMEN2Q8NCW0 462 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 STON2Q8WXE9 905 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 CAMK1GQ96NX5 476 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 PTPN18Q99952 460 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 CNPPD1Q9BV87 410 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 SEZ6LQ9BYH1 1024 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 MIR1-1HGQ9H1L0 117 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 DNAAF2Q9NVR5 837 aaKnown RBP10.53□□□□□ -0.72
CD44-201ENST00000263398 THUMPD1Q9NXG2 353 aaKnown RBP10.53□□□□□ -0.72
CD44-201ENST00000263398 SPATA7Q9P0W8 599 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 H3BSA7 217 aa10.52□□□□□ -0.72
CD44-201ENST00000263398 NFKBIEO00221 500 aa10.52□□□□□ -0.72
CD44-201ENST00000263398 E2F2Q14209 437 aa10.52□□□□□ -0.72
CD44-201ENST00000263398 SFT2D3Q587I9 215 aa10.52□□□□□ -0.72
CD44-201ENST00000263398 SLC2A7Q6PXP3 512 aa10.52□□□□□ -0.72
CD44-201ENST00000263398 AMZ2Q86W34 360 aa10.52□□□□□ -0.72
CD44-201ENST00000263398 CADM2Q8N3J6 435 aa10.52□□□□□ -0.72
CD44-201ENST00000263398 OXR1Q8N573 874 aa10.52□□□□□ -0.72
CD44-201ENST00000263398 C2CD4AQ8NCU7 369 aaPredicted RBP10.52□□□□□ -0.72
CD44-201ENST00000263398 NLGN2Q8NFZ4 835 aa10.52□□□□□ -0.72
CD44-201ENST00000263398 OR4F6Q8NGB9 312 aa10.52□□□□□ -0.72
CD44-201ENST00000263398 OR2AP1Q8NGE2 309 aa10.52□□□□□ -0.72
CD44-201ENST00000263398 TSPEARQ8WU66 669 aa10.52□□□□□ -0.72
CD44-201ENST00000263398 PIGUQ9H490 435 aa10.52□□□□□ -0.72
CD44-201ENST00000263398 CCSER2Q9H7U1 834 aa10.52□□□□□ -0.72
CD44-201ENST00000263398 DUS2Q9NX74 493 aaKnown RBP10.52□□□□□ -0.72
CD44-201ENST00000263398 MKS1Q9NXB0 559 aa10.52□□□□□ -0.72
CD44-201ENST00000263398 CKLFQ9UBR5 152 aa10.52□□□□□ -0.72
CD44-201ENST00000263398 CLEC4AQ9UMR7 237 aa10.52□□□□□ -0.72
CD44-201ENST00000263398 TMED5Q9Y3A6 229 aa10.52□□□□□ -0.72
CD44-201ENST00000263398 ABCC6O95255 1503 aa10.52□□□□□ -0.72
CD44-201ENST00000263398 TTC24A2A3L6 582 aaPredicted RBP10.52□□□□□ -0.73
CD44-201ENST00000263398 XKRYO14609 159 aa10.52□□□□□ -0.73
CD44-201ENST00000263398 HCRTO43612 131 aa10.52□□□□□ -0.73
CD44-201ENST00000263398 NPPAP01160 153 aa10.52□□□□□ -0.73
CD44-201ENST00000263398 PCCBP05166 539 aa10.52□□□□□ -0.73
CD44-201ENST00000263398 IL7RP16871 459 aa10.52□□□□□ -0.73
CD44-201ENST00000263398 ENGP17813 658 aa10.52□□□□□ -0.73
CD44-201ENST00000263398 ALDH3A2P51648 485 aa10.52□□□□□ -0.73
CD44-201ENST00000263398 UFM1P61960 85 aa10.52□□□□□ -0.73
CD44-201ENST00000263398 ZNF155Q12901 538 aaPredicted RBP10.52□□□□□ -0.73
CD44-201ENST00000263398 CHRNA6Q15825 494 aa10.52□□□□□ -0.73
CD44-201ENST00000263398 SYT16Q17RD7 645 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms