RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 VIPP01282 170 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 BMP4P12644 408 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 RCVRNP35243 200 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 HNF1BP35680 557 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 YBEYP58557 167 aaPredicted RBP10.43□□□□□ -0.74
USP28-201ENST00000003302 CDK5R2Q13319 367 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 POM121L1PQ3SYA9 428 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 USP39Q53GS9 565 aaKnown RBP10.43□□□□□ -0.74
USP28-201ENST00000003302 CADM3Q8N126 398 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 SH3YL1Q96HL8 342 aaPredicted RBP10.43□□□□□ -0.74
USP28-201ENST00000003302 RIBC2Q9H4K1 309 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 TUBA8Q9NY65 449 aaPredicted RBP10.43□□□□□ -0.74
USP28-201ENST00000003302 PKD2L2Q9NZM6 624 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 GMEB1Q9Y692 573 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 KRBA1A5PL33 1030 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 TBC1D4O60343 1298 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 OPN1SWP03999 348 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 HMOX2P30519 316 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 CCR7P32248 378 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 HTR7P34969 479 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 IL5RAQ01344 420 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 DOK6Q6PKX4 331 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 TPGS1Q6ZTW0 290 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 FAM162AQ96A26 154 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 RSPO3Q9BXY4 272 aaPredicted RBP10.43□□□□□ -0.74
USP28-201ENST00000003302 POPDC3Q9HBV1 291 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 RLIMQ9NVW2 624 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 PCM1Q15154 2024 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 A6NL46 340 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 FZD6O60353 706 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 CLPXO76031 633 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 BCL10O95999 233 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 LHCGRP22888 699 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 FOXM1Q08050 763 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 NFE2Q16621 373 aaPredicted RBP10.43□□□□□ -0.74
USP28-201ENST00000003302 CPZQ66K79 652 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 PTRHD1Q6GMV3 140 aaKnown RBP10.43□□□□□ -0.74
USP28-201ENST00000003302 NCEH1Q6PIU2 408 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 ALDH16A1Q8IZ83 802 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 NKAPQ8N5F7 415 aaKnown RBP10.43□□□□□ -0.74
USP28-201ENST00000003302 FUBP3Q96I24 572 aaKnown RBP eCLIP10.43□□□□□ -0.74
USP28-201ENST00000003302 APOLD1Q96LR9 279 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 CASD1Q96PB1 797 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 MTERF1Q99551 399 aaKnown RBP10.43□□□□□ -0.74
USP28-201ENST00000003302 ATP13A3Q9H7F0 1226 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 KIAA1522Q9P206 1035 aaPredicted RBP10.43□□□□□ -0.74
USP28-201ENST00000003302 PSME2Q9UL46 239 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 PCDHGA10Q9Y5H3 936 aa10.43□□□□□ -0.74
USP28-201ENST00000003302 ELOVL7A1L3X0 281 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 PRAMEF25A6NGN4 478 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 SYCE1LA8MT33 242 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 MYO1GB0I1T2 1018 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 GNGT2O14610 69 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 TBL1XO60907 577 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 DEAF1O75398 565 aaPredicted RBP10.42□□□□□ -0.74
USP28-201ENST00000003302 ATP5C1P36542 298 aaKnown RBP10.42□□□□□ -0.74
USP28-201ENST00000003302 NUDT6P53370 316 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 HSPA14Q0VDF9 509 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 RUNDC3AQ59EK9 446 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 COQ5Q5HYK3 327 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 DGKKQ5KSL6 1271 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 ACBD5Q5T8D3 534 aaPredicted RBP10.42□□□□□ -0.74
USP28-201ENST00000003302 ZNF852Q6ZMS4 543 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 PLPP6Q8IY26 295 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 C8orf59Q8N0T1 100 aaPredicted RBP10.42□□□□□ -0.74
USP28-201ENST00000003302 MAGED4Q96JG8 741 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 TRIM15Q9C019 465 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 GIN1Q9NXP7 522 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 ATG2BQ96BY7 2078 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 IFRD1O00458 451 aaPredicted RBP10.42□□□□□ -0.74
USP28-201ENST00000003302 SEPT4O43236 478 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 E2F6O75461 281 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 MT-ND2P03891 347 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 DNTTP04053 509 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 MAPKAPK2P49137 400 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 BCAP31P51572 246 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 GPR17Q13304 367 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 NFATC2Q13469 925 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 DDX39BQ13838 428 aaKnown RBP10.42□□□□□ -0.74
USP28-201ENST00000003302 ATP13A5Q4VNC0 1218 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 FAM98BQ52LJ0 330 aaKnown RBP10.42□□□□□ -0.74
USP28-201ENST00000003302 PAGE2BQ5JRK9 111 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 WDR53Q7Z5U6 358 aaPredicted RBP10.42□□□□□ -0.74
USP28-201ENST00000003302 FBXO22Q8NEZ5 403 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 ALPK1Q96QP1 1244 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 ZBTB20Q9HC78 741 aaPredicted RBP10.42□□□□□ -0.74
USP28-201ENST00000003302 DCAF13Q9NV06 445 aaKnown RBP10.42□□□□□ -0.74
USP28-201ENST00000003302 BAG5Q9UL15 447 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.42□□□□□ -0.74
USP28-201ENST00000003302 NUMA1Q14980 2115 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 FAM227AF5H4B4 570 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 PCDHGA12O60330 932 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 HOXB9P17482 250 aaPredicted RBP10.42□□□□□ -0.74
USP28-201ENST00000003302 SDC1P18827 310 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 TTPAP49638 278 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 GRSF1Q12849 480 aaKnown RBP eCLIP10.42□□□□□ -0.74
USP28-201ENST00000003302 CDKN3Q16667 212 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 IRAK1BP1Q5VVH5 260 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 ALG14Q96F25 216 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 CLMPQ9H6B4 373 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms