RNA–Protein interactions for RNA: ENST00000640652.1

SCN3A-210, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 5

Gene SCN3A, Length 8,825 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-210ENST00000640652 TEFQ10587 303 aa6.7□□□□□ -1.34
SCN3A-210ENST00000640652 PIK3R4Q99570 1358 aa6.7□□□□□ -1.34
SCN3A-210ENST00000640652 TXNDC2Q86VQ3 553 aa6.7□□□□□ -1.34
SCN3A-210ENST00000640652 CPS1P31327 1500 aa6.7□□□□□ -1.34
SCN3A-210ENST00000640652 PNPLA6Q8IY17 1366 aa6.7□□□□□ -1.34
SCN3A-210ENST00000640652 EMILIN1Q9Y6C2 1016 aa6.7□□□□□ -1.34
SCN3A-210ENST00000640652 KIF1AQ12756 1690 aa6.7□□□□□ -1.34
SCN3A-210ENST00000640652 SMC3Q9UQE7 1217 aa6.7□□□□□ -1.34
SCN3A-210ENST00000640652 XRN1Q8IZH2 1706 aaKnown RBP6.7□□□□□ -1.34
SCN3A-210ENST00000640652 PRPF40AO75400 957 aaKnown RBP6.7□□□□□ -1.34
SCN3A-210ENST00000640652 DDX58O95786 925 aaKnown RBP6.7□□□□□ -1.34
SCN3A-210ENST00000640652 DCTPP1Q9H773 170 aa6.7□□□□□ -1.34
SCN3A-210ENST00000640652 POLKQ9UBT6 870 aa6.7□□□□□ -1.34
SCN3A-210ENST00000640652 BAG4O95429 457 aaKnown RBP6.7□□□□□ -1.34
SCN3A-210ENST00000640652 IFIT2P09913 472 aaKnown RBP6.7□□□□□ -1.34
SCN3A-210ENST00000640652 LRRFIP1Q32MZ4 808 aaKnown RBP6.7□□□□□ -1.34
SCN3A-210ENST00000640652 SPATA31D1Q6ZQQ2 1576 aa6.69□□□□□ -1.34
SCN3A-210ENST00000640652 GNAT3A8MTJ3 354 aa6.69□□□□□ -1.34
SCN3A-210ENST00000640652 ANKRD44Q8N8A2 993 aa6.69□□□□□ -1.34
SCN3A-210ENST00000640652 THUMPD2Q9BTF0 503 aaKnown RBP6.69□□□□□ -1.34
SCN3A-210ENST00000640652 DIP2AQ14689 1571 aa6.69□□□□□ -1.34
SCN3A-210ENST00000640652 RGPD5Q99666 1765 aa6.69□□□□□ -1.34
SCN3A-210ENST00000640652 ANKRD1Q15327 319 aa6.69□□□□□ -1.34
SCN3A-210ENST00000640652 YEATS2Q9ULM3 1422 aa6.69□□□□□ -1.34
SCN3A-210ENST00000640652 TPRNQ4KMQ1 711 aa6.69□□□□□ -1.34
SCN3A-210ENST00000640652 AEBP1Q8IUX7 1158 aa6.69□□□□□ -1.34
SCN3A-210ENST00000640652 TNRQ92752 1358 aa6.69□□□□□ -1.34
SCN3A-210ENST00000640652 A2ML1A8K2U0 1454 aa6.69□□□□□ -1.34
SCN3A-210ENST00000640652 FSD2A1L4K1 749 aa6.69□□□□□ -1.34
SCN3A-210ENST00000640652 VAMP4O75379 141 aa6.69□□□□□ -1.34
SCN3A-210ENST00000640652 FOXD4L5Q5VV16 416 aaPredicted RBP6.69□□□□□ -1.34
SCN3A-210ENST00000640652 NME9Q86XW9 330 aa6.69□□□□□ -1.34
SCN3A-210ENST00000640652 FOXD4L4Q8WXT5 416 aaPredicted RBP6.69□□□□□ -1.34
SCN3A-210ENST00000640652 WAPLQ7Z5K2 1190 aa6.69□□□□□ -1.34
SCN3A-210ENST00000640652 PLEKHM2Q8IWE5 1019 aa6.68□□□□□ -1.34
SCN3A-210ENST00000640652 AOX1Q06278 1338 aa6.68□□□□□ -1.34
SCN3A-210ENST00000640652 HSP90B1P14625 803 aaKnown RBP6.68□□□□□ -1.34
SCN3A-210ENST00000640652 MCM10Q7L590 875 aa6.68□□□□□ -1.34
SCN3A-210ENST00000640652 TPM4P67936 248 aa6.68□□□□□ -1.34
SCN3A-210ENST00000640652 AGLP35573 1532 aa6.68□□□□□ -1.34
SCN3A-210ENST00000640652 SYCE3A1L190 88 aa6.68□□□□□ -1.34
SCN3A-210ENST00000640652 HDGFL1Q5TGJ6 251 aa6.68□□□□□ -1.34
SCN3A-210ENST00000640652 CLASRPQ8N2M8 674 aaKnown RBP6.68□□□□□ -1.34
SCN3A-210ENST00000640652 DIP2BQ9P265 1576 aa6.68□□□□□ -1.34
SCN3A-210ENST00000640652 SBNO1A3KN83 1393 aa6.68□□□□□ -1.34
SCN3A-210ENST00000640652 H3BQV1 296 aa6.67□□□□□ -1.34
SCN3A-210ENST00000640652 IFFO2Q5TF58 517 aa6.67□□□□□ -1.34
SCN3A-210ENST00000640652 CCDC88AQ3V6T2 1871 aa6.67□□□□□ -1.34
SCN3A-210ENST00000640652 NUTM2FA1L443 756 aa6.67□□□□□ -1.34
SCN3A-210ENST00000640652 ZBTB7BO15156 539 aaPredicted RBP6.67□□□□□ -1.34
SCN3A-210ENST00000640652 CCDC192P0DO97 292 aa6.67□□□□□ -1.34
SCN3A-210ENST00000640652 CYB5RLQ6IPT4 315 aa6.67□□□□□ -1.34
SCN3A-210ENST00000640652 INTS4Q96HW7 963 aaKnown RBP6.67□□□□□ -1.34
SCN3A-210ENST00000640652 SSFA2P28290 1259 aa6.67□□□□□ -1.34
SCN3A-210ENST00000640652 ZSCAN23Q3MJ62 389 aa6.67□□□□□ -1.34
SCN3A-210ENST00000640652 NCOA3Q9Y6Q9 1424 aa6.67□□□□□ -1.34
SCN3A-210ENST00000640652 SCN11AQ9UI33 1791 aa6.67□□□□□ -1.34
SCN3A-210ENST00000640652 SDSP20132 328 aa6.67□□□□□ -1.34
SCN3A-210ENST00000640652 PHACTR3Q96KR7 559 aa6.67□□□□□ -1.34
SCN3A-210ENST00000640652 SH2B1Q9NRF2 756 aaPredicted RBP6.67□□□□□ -1.34
SCN3A-210ENST00000640652 USP19O94966 1318 aa6.67□□□□□ -1.34
SCN3A-210ENST00000640652 G3BP1Q13283 466 aaKnown RBP eCLIP6.67□□□□□ -1.34
SCN3A-210ENST00000640652 MYH4Q9Y623 1939 aa6.67□□□□□ -1.34
SCN3A-210ENST00000640652 GOLGA6L19H0YKK7 550 aa6.67□□□□□ -1.34
SCN3A-210ENST00000640652 FLIIQ13045 1269 aa6.67□□□□□ -1.34
SCN3A-210ENST00000640652 CCDC183Q5T5S1 534 aa6.67□□□□□ -1.34
SCN3A-210ENST00000640652 ABTB2Q8N961 1025 aa6.67□□□□□ -1.34
SCN3A-210ENST00000640652 NAT10Q9H0A0 1025 aaKnown RBP6.66□□□□□ -1.34
SCN3A-210ENST00000640652 RGPD1P0DJD0 1748 aa6.66□□□□□ -1.34
SCN3A-210ENST00000640652 IL13P35225 146 aa6.66□□□□□ -1.34
SCN3A-210ENST00000640652 NLRP6P59044 892 aa6.66□□□□□ -1.34
SCN3A-210ENST00000640652 GNL2Q13823 731 aaKnown RBP6.66□□□□□ -1.34
SCN3A-210ENST00000640652 CEP85Q6P2H3 762 aa6.66□□□□□ -1.34
SCN3A-210ENST00000640652 KIF1BPQ96EK5 621 aa6.66□□□□□ -1.34
SCN3A-210ENST00000640652 CYP46A1Q9Y6A2 500 aa6.66□□□□□ -1.34
SCN3A-210ENST00000640652 PXDNLA1KZ92 1463 aa6.66□□□□□ -1.34
SCN3A-210ENST00000640652 SURF6O75683 361 aaKnown RBP6.66□□□□□ -1.34
SCN3A-210ENST00000640652 DHX8Q14562 1220 aaKnown RBP6.66□□□□□ -1.34
SCN3A-210ENST00000640652 FBXO31Q5XUX0 539 aaPredicted RBP6.66□□□□□ -1.34
SCN3A-210ENST00000640652 LMOD2Q6P5Q4 547 aa6.66□□□□□ -1.34
SCN3A-210ENST00000640652 CCDC34Q96HJ3 373 aa6.66□□□□□ -1.34
SCN3A-210ENST00000640652 MAP3K5Q99683 1374 aa6.66□□□□□ -1.34
SCN3A-210ENST00000640652 LTV1Q96GA3 475 aaPredicted RBP6.65□□□□□ -1.34
SCN3A-210ENST00000640652 ZSCAN31Q96LW9 406 aaPredicted RBP6.65□□□□□ -1.34
SCN3A-210ENST00000640652 PANK2Q9BZ23 570 aa6.65□□□□□ -1.34
SCN3A-210ENST00000640652 NRXN3Q9Y4C0 1643 aa6.65□□□□□ -1.34
SCN3A-210ENST00000640652 SRGAP3O43295 1099 aa6.65□□□□□ -1.34
SCN3A-210ENST00000640652 CAVIN2O95810 425 aa6.65□□□□□ -1.34
SCN3A-210ENST00000640652 USP26Q9BXU7 913 aa6.65□□□□□ -1.34
SCN3A-210ENST00000640652 TNNQ9UQP3 1299 aa6.65□□□□□ -1.34
SCN3A-210ENST00000640652 EXOC6BQ9Y2D4 811 aa6.65□□□□□ -1.34
SCN3A-210ENST00000640652 FAM83GA6ND36 823 aa6.65□□□□□ -1.34
SCN3A-210ENST00000640652 PDE1AP54750 535 aa6.65□□□□□ -1.34
SCN3A-210ENST00000640652 FAM13BQ9NYF5 915 aa6.65□□□□□ -1.34
SCN3A-210ENST00000640652 NAP1L2Q9ULW6 460 aaPredicted RBP6.65□□□□□ -1.34
SCN3A-210ENST00000640652 RTL1A6NKG5 1358 aa6.65□□□□□ -1.34
SCN3A-210ENST00000640652 KDM3BQ7LBC6 1761 aa6.65□□□□□ -1.35
SCN3A-210ENST00000640652 VPS37CA5D8V6 355 aaPredicted RBP6.65□□□□□ -1.35
SCN3A-210ENST00000640652 GLRX3O76003 335 aaKnown RBP6.65□□□□□ -1.35
SCN3A-210ENST00000640652 CASTP20810 708 aaKnown RBP6.65□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms