RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-256ENST00000637107 NHSQ6T4R5 1651 aa22.41■■□□□ 1.18
CLN3-256ENST00000637107 TMPOP42166 694 aaKnown RBP22.41■■□□□ 1.18
CLN3-256ENST00000637107 NEUROD2Q15784 382 aa22.41■■□□□ 1.18
CLN3-256ENST00000637107 ITGB4P16144 1822 aa22.41■■□□□ 1.18
CLN3-256ENST00000637107 SCN11AQ9UI33 1791 aa22.4■■□□□ 1.18
CLN3-256ENST00000637107 SPINK5Q9NQ38 1064 aaPredicted RBP22.4■■□□□ 1.18
CLN3-256ENST00000637107 RNMTO43148 476 aaKnown RBP22.39■■□□□ 1.18
CLN3-256ENST00000637107 DCTN1Q14203 1278 aa22.39■■□□□ 1.18
CLN3-256ENST00000637107 IL17REQ8NFR9 667 aa22.39■■□□□ 1.18
CLN3-256ENST00000637107 BCL11BQ9C0K0 894 aaPredicted RBP22.39■■□□□ 1.18
CLN3-256ENST00000637107 RIPK4P57078 832 aa22.39■■□□□ 1.17
CLN3-256ENST00000637107 TNS1Q9HBL0 1735 aaKnown RBP22.38■■□□□ 1.17
CLN3-256ENST00000637107 E9PSI1 815 aa22.38■■□□□ 1.17
CLN3-256ENST00000637107 MCM10Q7L590 875 aa22.38■■□□□ 1.17
CLN3-256ENST00000637107 ADAMTS7Q9UKP4 1686 aa22.38■■□□□ 1.17
CLN3-256ENST00000637107 ERVV-2B6SEH9 535 aa22.36■■□□□ 1.17
CLN3-256ENST00000637107 PIGBQ92521 554 aa22.36■■□□□ 1.17
CLN3-256ENST00000637107 RTF1Q92541 710 aaKnown RBP22.36■■□□□ 1.17
CLN3-256ENST00000637107 BTAF1O14981 1849 aa22.36■■□□□ 1.17
CLN3-256ENST00000637107 WWC1Q8IX03 1113 aa22.35■■□□□ 1.17
CLN3-256ENST00000637107 NFATC2IPQ8NCF5 419 aa22.35■■□□□ 1.17
CLN3-256ENST00000637107 APBA3O96018 575 aa22.35■■□□□ 1.17
CLN3-256ENST00000637107 CABP4P57796 275 aa22.35■■□□□ 1.17
CLN3-256ENST00000637107 CRBNQ96SW2 442 aa22.35■■□□□ 1.17
CLN3-256ENST00000637107 TMOD3Q9NYL9 352 aa22.35■■□□□ 1.17
CLN3-256ENST00000637107 CEMIPQ8WUJ3 1361 aa22.34■■□□□ 1.17
CLN3-256ENST00000637107 THUMPD2Q9BTF0 503 aaKnown RBP22.34■■□□□ 1.17
CLN3-256ENST00000637107 HTATSF1O43719 755 aaKnown RBP22.33■■□□□ 1.17
CLN3-256ENST00000637107 SLC52A2Q9HAB3 445 aa22.33■■□□□ 1.17
CLN3-256ENST00000637107 SF3B2Q13435 895 aaKnown RBP22.33■■□□□ 1.16
CLN3-256ENST00000637107 CCDC125Q86Z20 511 aa22.33■■□□□ 1.16
CLN3-256ENST00000637107 TRIM35Q9UPQ4 493 aa22.33■■□□□ 1.16
CLN3-256ENST00000637107 DEFB132Q7Z7B7 95 aa22.32■■□□□ 1.16
CLN3-256ENST00000637107 MRC1P22897 1456 aa22.31■■□□□ 1.16
CLN3-256ENST00000637107 SOCS7O14512 581 aa22.3■■□□□ 1.16
CLN3-256ENST00000637107 C20orf194Q5TEA3 1177 aa22.3■■□□□ 1.16
CLN3-256ENST00000637107 EN1Q05925 392 aaPredicted RBP22.29■■□□□ 1.16
CLN3-256ENST00000637107 TEFQ10587 303 aa22.29■■□□□ 1.16
CLN3-256ENST00000637107 NCBP3Q53F19 620 aaKnown RBP22.29■■□□□ 1.16
CLN3-256ENST00000637107 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.29■■□□□ 1.16
CLN3-256ENST00000637107 ASAP1Q9ULH1 1129 aa22.29■■□□□ 1.16
CLN3-256ENST00000637107 SIPA1L3O60292 1781 aaPredicted RBP22.28■■□□□ 1.16
CLN3-256ENST00000637107 LMOD3Q0VAK6 560 aa22.28■■□□□ 1.16
CLN3-256ENST00000637107 CCDC27Q2M243 656 aa22.28■■□□□ 1.16
CLN3-256ENST00000637107 WDR63Q8IWG1 891 aa22.27■■□□□ 1.16
CLN3-256ENST00000637107 ATG3Q9NT62 314 aa22.27■■□□□ 1.16
CLN3-256ENST00000637107 BAG6P46379 1132 aa22.27■■□□□ 1.16
CLN3-256ENST00000637107 PLSCR1O15162 318 aa22.26■■□□□ 1.15
CLN3-256ENST00000637107 SLC39A6Q13433 755 aa22.26■■□□□ 1.15
CLN3-256ENST00000637107 EZH2Q15910 746 aaKnown RBP22.25■■□□□ 1.15
CLN3-256ENST00000637107 CAMKK2Q96RR4 588 aa22.25■■□□□ 1.15
CLN3-256ENST00000637107 PALLDQ8WX93 1383 aa22.25■■□□□ 1.15
CLN3-256ENST00000637107 PROM2Q8N271 834 aa22.24■■□□□ 1.15
CLN3-256ENST00000637107 MIS18AQ9NYP9 233 aa22.24■■□□□ 1.15
CLN3-256ENST00000637107 BTBD11A6QL63 1104 aa22.23■■□□□ 1.15
CLN3-256ENST00000637107 KCNQ4P56696 695 aa22.23■■□□□ 1.15
CLN3-256ENST00000637107 TAF7Q15545 349 aaPredicted RBP22.23■■□□□ 1.15
CLN3-256ENST00000637107 LY75O60449 1722 aa22.22■■□□□ 1.15
CLN3-256ENST00000637107 KCNQ3O43525 872 aa22.21■■□□□ 1.15
CLN3-256ENST00000637107 BCAR3O75815 825 aa22.21■■□□□ 1.15
CLN3-256ENST00000637107 FANCIQ9NVI1 1328 aa22.21■■□□□ 1.15
CLN3-256ENST00000637107 PAPPAQ13219 1627 aa22.21■■□□□ 1.15
CLN3-256ENST00000637107 RGPD3A6NKT7 1758 aaPredicted RBP22.21■■□□□ 1.15
CLN3-256ENST00000637107 RGPD4Q7Z3J3 1758 aa22.21■■□□□ 1.15
CLN3-256ENST00000637107 PTCD1O75127 700 aaKnown RBP22.21■■□□□ 1.15
CLN3-256ENST00000637107 TXNRD1Q16881 649 aa22.21■■□□□ 1.15
CLN3-256ENST00000637107 SMARCC1Q92922 1105 aaPredicted RBP22.21■■□□□ 1.15
CLN3-256ENST00000637107 ZNF790Q6PG37 636 aa22.19■■□□□ 1.14
CLN3-256ENST00000637107 LRRC4BQ9NT99 713 aa22.19■■□□□ 1.14
CLN3-256ENST00000637107 RBM42Q9BTD8 480 aaKnown RBP22.19■■□□□ 1.14
CLN3-256ENST00000637107 LAS1LQ9Y4W2 734 aaKnown RBP22.19■■□□□ 1.14
CLN3-256ENST00000637107 SLC4A9Q96Q91 983 aa22.18■■□□□ 1.14
CLN3-256ENST00000637107 LOC102724428A0A0B4J2F2 783 aa22.18■■□□□ 1.14
CLN3-256ENST00000637107 SIK1P57059 783 aa22.18■■□□□ 1.14
CLN3-256ENST00000637107 TTC5Q8N0Z6 440 aa22.18■■□□□ 1.14
CLN3-256ENST00000637107 CCNL1Q9UK58 526 aaPredicted RBP22.17■■□□□ 1.14
CLN3-256ENST00000637107 KCPQ6ZWJ8 1503 aa22.17■■□□□ 1.14
CLN3-256ENST00000637107 UBR2Q8IWV8 1755 aa22.17■■□□□ 1.14
CLN3-256ENST00000637107 RREB1Q92766 1687 aa22.16■■□□□ 1.14
CLN3-256ENST00000637107 KDM3BQ7LBC6 1761 aa22.16■■□□□ 1.14
CLN3-256ENST00000637107 ZNF496Q96IT1 587 aaPredicted RBP22.16■■□□□ 1.14
CLN3-256ENST00000637107 TSPYL4Q9UJ04 414 aa22.16■■□□□ 1.14
CLN3-256ENST00000637107 CHL1O00533 1208 aa22.14■■□□□ 1.14
CLN3-256ENST00000637107 ATP6V1AP38606 617 aa22.14■■□□□ 1.14
CLN3-256ENST00000637107 SLC27A3Q5K4L6 730 aa22.14■■□□□ 1.14
CLN3-256ENST00000637107 CFAP44Q96MT7 982 aa22.14■■□□□ 1.14
CLN3-256ENST00000637107 MYH16Q9H6N6 1097 aa22.14■■□□□ 1.14
CLN3-256ENST00000637107 TCERG1O14776 1098 aaKnown RBP22.14■■□□□ 1.13
CLN3-256ENST00000637107 ZNF853P0CG23 659 aa22.13■■□□□ 1.13
CLN3-256ENST00000637107 CALD1Q05682 793 aaKnown RBP22.13■■□□□ 1.13
CLN3-256ENST00000637107 ITPK1Q13572 414 aa22.13■■□□□ 1.13
CLN3-256ENST00000637107 NUP188Q5SRE5 1749 aa22.13■■□□□ 1.13
CLN3-256ENST00000637107 RARSP54136 660 aaKnown RBP22.12■■□□□ 1.13
CLN3-256ENST00000637107 KDM2BQ8NHM5 1336 aa22.12■■□□□ 1.13
CLN3-256ENST00000637107 MBIPQ9NS73 344 aa22.12■■□□□ 1.13
CLN3-256ENST00000637107 IFT57Q9NWB7 429 aa22.12■■□□□ 1.13
CLN3-256ENST00000637107 TAF1LQ8IZX4 1826 aa22.11■■□□□ 1.13
CLN3-256ENST00000637107 PDE3AQ14432 1141 aa22.11■■□□□ 1.13
CLN3-256ENST00000637107 FMNL2Q96PY5 1086 aa22.11■■□□□ 1.13
CLN3-256ENST00000637107 BABAM1Q9NWV8 329 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms