RNA–Protein interactions for RNA: ENST00000612856.4

FAM3A-221, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 2

Gene FAM3A, Length 3,995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-221ENST00000612856 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.16□□□□□ -0.3
FAM3A-221ENST00000612856 MPHOSPH8Q99549 860 aa13.16□□□□□ -0.3
FAM3A-221ENST00000612856 PDE4CQ08493 712 aa13.16□□□□□ -0.3
FAM3A-221ENST00000612856 MBIPQ9NS73 344 aa13.16□□□□□ -0.3
FAM3A-221ENST00000612856 NPC1L1Q9UHC9 1359 aa13.16□□□□□ -0.3
FAM3A-221ENST00000612856 IQGAP1P46940 1657 aa13.16□□□□□ -0.3
FAM3A-221ENST00000612856 PI4KAP2A4QPH2 592 aa13.16□□□□□ -0.3
FAM3A-221ENST00000612856 ZPR1O75312 459 aa13.16□□□□□ -0.3
FAM3A-221ENST00000612856 GNL2Q13823 731 aaKnown RBP13.16□□□□□ -0.3
FAM3A-221ENST00000612856 TSPYL6Q8N831 410 aa13.16□□□□□ -0.3
FAM3A-221ENST00000612856 PI4KAP1Q8N8J0 262 aa13.16□□□□□ -0.3
FAM3A-221ENST00000612856 LGR6Q9HBX8 967 aa13.16□□□□□ -0.3
FAM3A-221ENST00000612856 SBNO2Q9Y2G9 1366 aa13.16□□□□□ -0.3
FAM3A-221ENST00000612856 CAMSAP1Q5T5Y3 1602 aa13.15□□□□□ -0.3
FAM3A-221ENST00000612856 NBPF6Q5VWK0 638 aa13.15□□□□□ -0.3
FAM3A-221ENST00000612856 NBPF4Q96M43 638 aa13.15□□□□□ -0.3
FAM3A-221ENST00000612856 SMARCA5O60264 1052 aaPredicted RBP13.15□□□□□ -0.3
FAM3A-221ENST00000612856 HOXC9P31274 260 aa13.15□□□□□ -0.3
FAM3A-221ENST00000612856 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.15□□□□□ -0.3
FAM3A-221ENST00000612856 PCDHB15Q9Y5E8 787 aa13.15□□□□□ -0.3
FAM3A-221ENST00000612856 GLI2P10070 1586 aa13.15□□□□□ -0.3
FAM3A-221ENST00000612856 UQCRHLA0A096LP55 91 aa13.14□□□□□ -0.31
FAM3A-221ENST00000612856 UQCRHP07919 91 aa13.14□□□□□ -0.31
FAM3A-221ENST00000612856 ATP6V1AP38606 617 aa13.14□□□□□ -0.31
FAM3A-221ENST00000612856 FKBP4Q02790 459 aaKnown RBP eCLIP13.14□□□□□ -0.31
FAM3A-221ENST00000612856 C8orf58Q8NAV2 365 aa13.14□□□□□ -0.31
FAM3A-221ENST00000612856 TRMT112Q9UI30 125 aaKnown RBP13.14□□□□□ -0.31
FAM3A-221ENST00000612856 CLASRPQ8N2M8 674 aaKnown RBP13.14□□□□□ -0.31
FAM3A-221ENST00000612856 C22orf23Q9BZE7 217 aa13.14□□□□□ -0.31
FAM3A-221ENST00000612856 LMTK2Q8IWU2 1503 aa13.14□□□□□ -0.31
FAM3A-221ENST00000612856 PRIM1P49642 420 aaKnown RBP13.13□□□□□ -0.31
FAM3A-221ENST00000612856 CHAF1AQ13111 956 aaPredicted RBP13.13□□□□□ -0.31
FAM3A-221ENST00000612856 AMOTQ4VCS5 1084 aa13.13□□□□□ -0.31
FAM3A-221ENST00000612856 LARP1Q6PKG0 1096 aaKnown RBP13.13□□□□□ -0.31
FAM3A-221ENST00000612856 TRIM35Q9UPQ4 493 aa13.13□□□□□ -0.31
FAM3A-221ENST00000612856 IL2RBP14784 551 aa13.13□□□□□ -0.31
FAM3A-221ENST00000612856 TSHZ3Q63HK5 1081 aa13.13□□□□□ -0.31
FAM3A-221ENST00000612856 UBE3BQ7Z3V4 1068 aa13.13□□□□□ -0.31
FAM3A-221ENST00000612856 USP21Q9UK80 565 aa13.13□□□□□ -0.31
FAM3A-221ENST00000612856 IQSEC3Q9UPP2 1182 aaPredicted RBP13.13□□□□□ -0.31
FAM3A-221ENST00000612856 CCDC57Q2TAC2 916 aa13.13□□□□□ -0.31
FAM3A-221ENST00000612856 ABCF2Q9UG63 623 aa13.13□□□□□ -0.31
FAM3A-221ENST00000612856 A0A087WZG4 1122 aa13.13□□□□□ -0.31
FAM3A-221ENST00000612856 BBXQ8WY36 941 aaPredicted RBP13.13□□□□□ -0.31
FAM3A-221ENST00000612856 PDZRN3Q9UPQ7 1066 aa13.13□□□□□ -0.31
FAM3A-221ENST00000612856 ROBO2Q9HCK4 1378 aa13.12□□□□□ -0.31
FAM3A-221ENST00000612856 TRIM27P14373 513 aa13.12□□□□□ -0.31
FAM3A-221ENST00000612856 CHPF2Q9P2E5 772 aa13.12□□□□□ -0.31
FAM3A-221ENST00000612856 TULP4Q9NRJ4 1543 aa13.12□□□□□ -0.31
FAM3A-221ENST00000612856 GNAI2P04899 355 aa13.12□□□□□ -0.31
FAM3A-221ENST00000612856 PDE3AQ14432 1141 aa13.12□□□□□ -0.31
FAM3A-221ENST00000612856 COPS6Q7L5N1 327 aa13.12□□□□□ -0.31
FAM3A-221ENST00000612856 NUTM1Q86Y26 1132 aa13.12□□□□□ -0.31
FAM3A-221ENST00000612856 QRICH2Q9H0J4 1663 aa13.12□□□□□ -0.31
FAM3A-221ENST00000612856 GNAI3P08754 354 aa13.12□□□□□ -0.31
FAM3A-221ENST00000612856 AK7Q96M32 723 aa13.12□□□□□ -0.31
FAM3A-221ENST00000612856 FMNL2Q96PY5 1086 aa13.12□□□□□ -0.31
FAM3A-221ENST00000612856 PRR36Q9H6K5 1346 aa13.11□□□□□ -0.31
FAM3A-221ENST00000612856 LAMC1P11047 1609 aa13.11□□□□□ -0.31
FAM3A-221ENST00000612856 NEXMIFQ5QGS0 1516 aa13.11□□□□□ -0.31
FAM3A-221ENST00000612856 ABCC11Q96J66 1382 aa13.11□□□□□ -0.31
FAM3A-221ENST00000612856 DHX16O60231 1041 aaKnown RBP13.11□□□□□ -0.31
FAM3A-221ENST00000612856 VPS53Q5VIR6 699 aa13.11□□□□□ -0.31
FAM3A-221ENST00000612856 RNF214Q8ND24 703 aa13.11□□□□□ -0.31
FAM3A-221ENST00000612856 GOLGA6L4A6NEF3 574 aa13.11□□□□□ -0.31
FAM3A-221ENST00000612856 RBM5P52756 815 aaKnown RBP eCLIP13.11□□□□□ -0.31
FAM3A-221ENST00000612856 TFCP2L1Q9NZI6 479 aa13.11□□□□□ -0.31
FAM3A-221ENST00000612856 ADGRB1O14514 1584 aa13.11□□□□□ -0.31
FAM3A-221ENST00000612856 A2ML1A8K2U0 1454 aa13.1□□□□□ -0.31
FAM3A-221ENST00000612856 SLC4A8Q2Y0W8 1093 aa13.1□□□□□ -0.31
FAM3A-221ENST00000612856 FSD1Q9BTV5 496 aa13.1□□□□□ -0.31
FAM3A-221ENST00000612856 PIK3C2BO00750 1634 aa13.1□□□□□ -0.31
FAM3A-221ENST00000612856 ARHGAP31Q2M1Z3 1444 aa13.1□□□□□ -0.31
FAM3A-221ENST00000612856 CLSTN1O94985 981 aa13.1□□□□□ -0.31
FAM3A-221ENST00000612856 SIGLEC1Q9BZZ2 1709 aa13.1□□□□□ -0.31
FAM3A-221ENST00000612856 FLIIQ13045 1269 aa13.1□□□□□ -0.31
FAM3A-221ENST00000612856 RRP12Q5JTH9 1297 aaKnown RBP13.1□□□□□ -0.31
FAM3A-221ENST00000612856 XAGE3Q8WTP9 111 aa13.1□□□□□ -0.31
FAM3A-221ENST00000612856 CBX1P83916 185 aa13.09□□□□□ -0.31
FAM3A-221ENST00000612856 MVPQ14764 893 aaKnown RBP13.09□□□□□ -0.31
FAM3A-221ENST00000612856 ZRSR1Q15695 479 aaKnown RBP13.09□□□□□ -0.31
FAM3A-221ENST00000612856 SNRKQ9NRH2 765 aa13.09□□□□□ -0.31
FAM3A-221ENST00000612856 MAP3K2Q9Y2U5 619 aa13.09□□□□□ -0.31
FAM3A-221ENST00000612856 IGSF3O75054 1194 aa13.09□□□□□ -0.31
FAM3A-221ENST00000612856 RFC4P35249 363 aa13.09□□□□□ -0.31
FAM3A-221ENST00000612856 ZNF622Q969S3 477 aaKnown RBP eCLIP13.09□□□□□ -0.31
FAM3A-221ENST00000612856 CCDC8Q9H0W5 538 aaPredicted RBP13.09□□□□□ -0.31
FAM3A-221ENST00000612856 NSD2O96028 1365 aa13.08□□□□□ -0.31
FAM3A-221ENST00000612856 ZSCAN30Q86W11 494 aa13.08□□□□□ -0.31
FAM3A-221ENST00000612856 LRRFIP2Q9Y608 721 aaKnown RBP13.08□□□□□ -0.31
FAM3A-221ENST00000612856 TTC21AQ8NDW8 1320 aa13.08□□□□□ -0.32
FAM3A-221ENST00000612856 ATP2B2Q01814 1243 aa13.08□□□□□ -0.32
FAM3A-221ENST00000612856 TRMT2AQ8IZ69 625 aaKnown RBP13.08□□□□□ -0.32
FAM3A-221ENST00000612856 CLTCQ00610 1675 aaKnown RBP13.08□□□□□ -0.32
FAM3A-221ENST00000612856 A1BGP04217 495 aa13.08□□□□□ -0.32
FAM3A-221ENST00000612856 IP6K1Q92551 441 aa13.08□□□□□ -0.32
FAM3A-221ENST00000612856 JAG2Q9Y219 1238 aa13.08□□□□□ -0.32
FAM3A-221ENST00000612856 DIP2BQ9P265 1576 aa13.08□□□□□ -0.32
FAM3A-221ENST00000612856 CAVIN1Q6NZI2 390 aaKnown RBP13.07□□□□□ -0.32
FAM3A-221ENST00000612856 SIRT1Q96EB6 747 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms