RNA–Protein interactions for RNA: ENST00000610733.1

TPM1-233, Transcript of tropomyosin 1, human

TSL 2 BASIC

Gene TPM1, Length 3,957 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-233	ENST00000610733	MTHFSD	Q2M296	383 aa	Known RBP	11.48	□□□□□ -0.57
TPM1-233	ENST00000610733	C16orf45	Q96MC5	204 aa	Predicted RBP	11.48	□□□□□ -0.57
TPM1-233	ENST00000610733	EID1	Q9Y6B2	187 aa		11.48	□□□□□ -0.57
TPM1-233	ENST00000610733	NDUFB9	Q9Y6M9	179 aa		11.48	□□□□□ -0.57
TPM1-233	ENST00000610733	CD109	Q6YHK3	1445 aa		11.48	□□□□□ -0.57
TPM1-233	ENST00000610733	WDR33	Q9C0J8	1336 aa	Known RBP	11.48	□□□□□ -0.57
TPM1-233	ENST00000610733	PI4KAP2	A4QPH2	592 aa		11.48	□□□□□ -0.57
TPM1-233	ENST00000610733	ZNF771	Q7L3S4	317 aa	Predicted RBP	11.48	□□□□□ -0.57
TPM1-233	ENST00000610733	RIC3	Q7Z5B4	369 aa		11.48	□□□□□ -0.57
TPM1-233	ENST00000610733	PI4KAP1	Q8N8J0	262 aa		11.48	□□□□□ -0.57
TPM1-233	ENST00000610733	CHMP4C	Q96CF2	233 aa		11.48	□□□□□ -0.57
TPM1-233	ENST00000610733	TOMM22	Q9NS69	142 aa		11.48	□□□□□ -0.57
TPM1-233	ENST00000610733	DNM1	Q05193	864 aa	Known RBP	11.47	□□□□□ -0.57
TPM1-233	ENST00000610733	UNC5CL	Q8IV45	518 aa		11.47	□□□□□ -0.57
TPM1-233	ENST00000610733	ATP6V1D	Q9Y5K8	247 aa		11.47	□□□□□ -0.57
TPM1-233	ENST00000610733	C1orf141	Q5JVX7	400 aa		11.47	□□□□□ -0.57
TPM1-233	ENST00000610733	ESYT1	Q9BSJ8	1104 aa		11.47	□□□□□ -0.57
TPM1-233	ENST00000610733	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	11.47	□□□□□ -0.57
TPM1-233	ENST00000610733		V9GYY5	206 aa	Predicted RBP	11.47	□□□□□ -0.57
TPM1-233	ENST00000610733	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	11.47	□□□□□ -0.57
TPM1-233	ENST00000610733	PSME1	Q06323	249 aa		11.47	□□□□□ -0.57
TPM1-233	ENST00000610733	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.47	□□□□□ -0.57
TPM1-233	ENST00000610733	PDRG1	Q9NUG6	133 aa		11.47	□□□□□ -0.57
TPM1-233	ENST00000610733	RPGRIP1L	Q68CZ1	1315 aa		11.47	□□□□□ -0.57
TPM1-233	ENST00000610733	TTC37	Q6PGP7	1564 aa		11.46	□□□□□ -0.57
TPM1-233	ENST00000610733	GOLGA6L6	A8MZA4	724 aa		11.46	□□□□□ -0.57
TPM1-233	ENST00000610733	ISY1	Q9ULR0	285 aa	Known RBP	11.46	□□□□□ -0.57
TPM1-233	ENST00000610733	ACE	P12821	1306 aa		11.46	□□□□□ -0.57
TPM1-233	ENST00000610733	SYNM	O15061	1565 aa		11.46	□□□□□ -0.57
TPM1-233	ENST00000610733	LRSAM1	Q6UWE0	723 aa		11.46	□□□□□ -0.57
TPM1-233	ENST00000610733	FAM177A1	Q8N128	213 aa	Predicted RBP	11.46	□□□□□ -0.57
TPM1-233	ENST00000610733	PRDM15	P57071	1507 aa	Predicted RBP	11.46	□□□□□ -0.58
TPM1-233	ENST00000610733	SASS6	Q6UVJ0	657 aa		11.46	□□□□□ -0.58
TPM1-233	ENST00000610733	BBX	Q8WY36	941 aa	Predicted RBP	11.46	□□□□□ -0.58
TPM1-233	ENST00000610733	ATP2B1	P20020	1258 aa		11.45	□□□□□ -0.58
TPM1-233	ENST00000610733	RUFY2	Q8WXA3	655 aa		11.45	□□□□□ -0.58
TPM1-233	ENST00000610733	TRMT1	Q9NXH9	659 aa	Known RBP	11.45	□□□□□ -0.58
TPM1-233	ENST00000610733	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	11.45	□□□□□ -0.58
TPM1-233	ENST00000610733	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	11.45	□□□□□ -0.58
TPM1-233	ENST00000610733	EIF2AK4	Q9P2K8	1649 aa	Known RBP	11.45	□□□□□ -0.58
TPM1-233	ENST00000610733	CDC42BPA	Q5VT25	1732 aa		11.45	□□□□□ -0.58
TPM1-233	ENST00000610733	IL16	Q14005	1332 aa		11.45	□□□□□ -0.58
TPM1-233	ENST00000610733	TPD52L1	Q16890	204 aa	Predicted RBP	11.45	□□□□□ -0.58
TPM1-233	ENST00000610733	TRPM1	Q7Z4N2	1603 aa		11.45	□□□□□ -0.58
TPM1-233	ENST00000610733	KLHDC4	Q8TBB5	520 aa		11.45	□□□□□ -0.58
TPM1-233	ENST00000610733	NPC1L1	Q9UHC9	1359 aa		11.45	□□□□□ -0.58
TPM1-233	ENST00000610733	MAST1	Q9Y2H9	1570 aa		11.45	□□□□□ -0.58
TPM1-233	ENST00000610733	CYP46A1	Q9Y6A2	500 aa		11.45	□□□□□ -0.58
TPM1-233	ENST00000610733	GJB2	P29033	226 aa		11.45	□□□□□ -0.58
TPM1-233	ENST00000610733	IL13	P35225	146 aa		11.45	□□□□□ -0.58
TPM1-233	ENST00000610733	ISM2	Q6H9L7	571 aa		11.45	□□□□□ -0.58
TPM1-233	ENST00000610733	ZNF530	Q6P9A1	599 aa	Predicted RBP	11.45	□□□□□ -0.58
TPM1-233	ENST00000610733	KIF2C	Q99661	725 aa		11.45	□□□□□ -0.58
TPM1-233	ENST00000610733	RAB11FIP3	O75154	756 aa		11.44	□□□□□ -0.58
TPM1-233	ENST00000610733	ERCC6L2	Q5T890	1561 aa		11.44	□□□□□ -0.58
TPM1-233	ENST00000610733	TNMD	Q9H2S6	317 aa		11.44	□□□□□ -0.58
TPM1-233	ENST00000610733	NLRP2	Q9NX02	1062 aa		11.44	□□□□□ -0.58
TPM1-233	ENST00000610733	ESCO1	Q5FWF5	840 aa		11.44	□□□□□ -0.58
TPM1-233	ENST00000610733	ZKSCAN5	Q9Y2L8	839 aa		11.44	□□□□□ -0.58
TPM1-233	ENST00000610733	STX6	O43752	255 aa		11.43	□□□□□ -0.58
TPM1-233	ENST00000610733	ZC3H6	P61129	1189 aa	Known RBP	11.43	□□□□□ -0.58
TPM1-233	ENST00000610733	PDCL3	Q9H2J4	239 aa		11.43	□□□□□ -0.58
TPM1-233	ENST00000610733	ERCC4	Q92889	916 aa	Predicted RBP	11.43	□□□□□ -0.58
TPM1-233	ENST00000610733	SYTL4	Q96C24	671 aa	Predicted RBP	11.43	□□□□□ -0.58
TPM1-233	ENST00000610733	SDF4	Q9BRK5	362 aa		11.43	□□□□□ -0.58
TPM1-233	ENST00000610733	AK2	P54819	239 aa		11.43	□□□□□ -0.58
TPM1-233	ENST00000610733	CWF19L2	Q2TBE0	894 aa	Known RBP	11.43	□□□□□ -0.58
TPM1-233	ENST00000610733	TRERF1	Q96PN7	1200 aa		11.43	□□□□□ -0.58
TPM1-233	ENST00000610733	CHPF2	Q9P2E5	772 aa		11.43	□□□□□ -0.58
TPM1-233	ENST00000610733	GNAT3	A8MTJ3	354 aa		11.43	□□□□□ -0.58
TPM1-233	ENST00000610733	CHML	P26374	656 aa		11.43	□□□□□ -0.58
TPM1-233	ENST00000610733	CCT2	P78371	535 aa	Known RBP	11.43	□□□□□ -0.58
TPM1-233	ENST00000610733	ARHGAP45	Q92619	1136 aa		11.43	□□□□□ -0.58
TPM1-233	ENST00000610733	TMX1	Q9H3N1	280 aa		11.43	□□□□□ -0.58
TPM1-233	ENST00000610733	OFD1	O75665	1012 aa		11.42	□□□□□ -0.58
TPM1-233	ENST00000610733	APP	P05067	770 aa		11.42	□□□□□ -0.58
TPM1-233	ENST00000610733	ADCY10	Q96PN6	1610 aa		11.42	□□□□□ -0.58
TPM1-233	ENST00000610733		A0A087WWV3	80 aa		11.42	□□□□□ -0.58
TPM1-233	ENST00000610733	MCM2	P49736	904 aa		11.42	□□□□□ -0.58
TPM1-233	ENST00000610733	HOMER1	Q86YM7	354 aa		11.42	□□□□□ -0.58
TPM1-233	ENST00000610733	SPATA32	Q96LK8	384 aa		11.42	□□□□□ -0.58
TPM1-233	ENST00000610733	CDK11B	P21127	795 aa	Known RBP	11.42	□□□□□ -0.58
TPM1-233	ENST00000610733	PPP4R3B	Q5MIZ7	849 aa		11.42	□□□□□ -0.58
TPM1-233	ENST00000610733	RHPN1	Q8TCX5	695 aa		11.42	□□□□□ -0.58
TPM1-233	ENST00000610733	EDC3	Q96F86	508 aa	Known RBP	11.42	□□□□□ -0.58
TPM1-233	ENST00000610733	ZNF692	Q9BU19	519 aa	Predicted RBP	11.42	□□□□□ -0.58
TPM1-233	ENST00000610733	BTBD11	A6QL63	1104 aa		11.41	□□□□□ -0.58
TPM1-233	ENST00000610733	NBPF7	P0C2Y1	421 aa	Predicted RBP	11.41	□□□□□ -0.58
TPM1-233	ENST00000610733	HSP90AA4P	Q58FG1	418 aa		11.41	□□□□□ -0.58
TPM1-233	ENST00000610733	CHST3	Q7LGC8	479 aa		11.41	□□□□□ -0.58
TPM1-233	ENST00000610733	LRRC59	Q96AG4	307 aa	Known RBP	11.41	□□□□□ -0.58
TPM1-233	ENST00000610733	ZNF518A	Q6AHZ1	1483 aa		11.41	□□□□□ -0.58
TPM1-233	ENST00000610733	CCDC192	P0DO97	292 aa		11.41	□□□□□ -0.58
TPM1-233	ENST00000610733	WASHC4	Q2M389	1173 aa		11.41	□□□□□ -0.58
TPM1-233	ENST00000610733	BLOC1S2	Q6QNY1	142 aa		11.41	□□□□□ -0.58
TPM1-233	ENST00000610733	ASXL2	Q76L83	1435 aa		11.41	□□□□□ -0.58
TPM1-233	ENST00000610733	BIN1	O00499	593 aa		11.41	□□□□□ -0.58
TPM1-233	ENST00000610733	NEXN	Q0ZGT2	675 aa		11.41	□□□□□ -0.58
TPM1-233	ENST00000610733	LUZP1	Q86V48	1076 aa		11.41	□□□□□ -0.58
TPM1-233	ENST00000610733	NUP62CL	Q9H1M0	184 aa		11.41	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms